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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Agard, D.A."

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Search Summary

This query matches 117 Structures.

Refinements

Structure Determination Methodology

experimental (117)

Scientific Name of Source Organism

	Lysobacter enzymogenes (46)
	Homo sapiens (28)
	Saccharomyces cerevisiae S288C (11)
	Danio rerio (9)
	Escherichia coli (5)
	Mus musculus (3)
	Pseudomonas phage 201phi2-1 (3)
	Saccharomyces cerevisiae (3)
	Bacillus thuringiensis serovar israelensis (2)
	Escherichia coli K-12 (2)

More...

Taxonomy

	Bacteria (60)
	Eukaryota (53)
	Duplodnaviria (7)
	Riboviria (2)
	other sequences (2)
	Archaea (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (77)
	ELECTRON MICROSCOPY (39)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (117)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (8)
	1.5 - 2.0 (15)
	2.0 - 2.5 (37)
	2.5 - 3.0 (14)
	3.0 - 3.5 (15)
	3.5 - 4.0 (13)
	4.0 - 4.5 (3)
	> 4.5 (8)

Release Date

	1990 - 1994 (20)
	1995 - 1999 (23)
	2000 - 2004 (5)
	2005 - 2009 (11)
	2010 - 2014 (14)
	2015 - 2019 (14)
	2020 - 2024 (30)

Enzyme Classification Name

	Hydrolases (61)
	Oxidoreductases (5)
	Transferases (7)
	Isomerases (3)

Symmetry Type

	Asymmetric (86)
	Cyclic (29)
	Dihedral (4)
	Helical (2)
	Octahedral (1)

SCOP Classification

	All beta proteins (48)
	All alpha proteins (8)
	Alpha and beta proteins (a+b) (9)
	Artifacts (5)
	Alpha and beta proteins (a/b) (3)
	Coiled coil proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 117 Structures

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1BOQ \| pdb_00001boq	Download File View File

PRO REGION C-TERMINUS: PROTEASE ACTIVE SITE INTERACTIONS ARE CRITICAL IN CATALYZING THE FOLDING OF ALPHA-LYTIC PROTEASE

Peters, R.J., Shiau, A.K., Sohl, J.L., Anderson, D.E., Tang, G., Silen, J.L., Agard, D.A.

(1998) Biochemistry 37: 12058-12067

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lysobacter enzymogenes
Macromolecule	PROTEIN (ALPHA-LYTIC PROTEASE) (protein)
Unique Ligands	SO4

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1GBA \| pdb_00001gba	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY ALA

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein)
Unique Ligands	SO4

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1GBB \| pdb_00001gbb	Download File View File

Alpha-lytic protease with met 190 replaced by ALA AND GLY 216 replaced by ALA complex with METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBC \| pdb_00001gbc	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBD \| pdb_00001gbd	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBE \| pdb_00001gbe	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein)
Unique Ligands	SO4

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1GBF \| pdb_00001gbf	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBH \| pdb_00001gbh	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

Explore in 3D

1GBI \| pdb_00001gbi	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBJ \| pdb_00001gbj	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein)
Unique Ligands	SO4

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1GBK \| pdb_00001gbk	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBL \| pdb_00001gbl	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

Explore in 3D

1GBM \| pdb_00001gbm	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1K7B \| pdb_00001k7b	Download File View File

NMR Solution Structure of sTva47, the Viral-Binding Domain of Tva

Tonelli, M., Peters, R.J., James, T.L., Agard, D.A.

(2001) FEBS Lett 509: 161-168

Released	2001-12-19
Method	SOLUTION NMR
Organisms	Coturnix coturnix
Macromolecule	SUBGROUP A ROUS SARCOMA VIRUS RECEPTOR PG800 AND PG950 (protein)

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1L2I \| pdb_00001l2i	Download File View File

Human Estrogen Receptor alpha Ligand-binding Domain in Complex with (R,R)-5,11-cis-diethyl-5,6,11,12-tetrahydrochrysene-2,8-diol and a Glucocorticoid Receptor Interacting Protein 1 NR box II Peptide

Shiau, A.K., Barstad, D., Radek, J.T., Meyers, M.J., Nettles, K.W., Katzenellenbogen, B.S., Katzenellenbogen, J.A., Agard, D.A., Greene, G.L.

(2002) Nat Struct Biol 9: 359-364

Released	2002-05-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ESTROGEN RECEPTOR (protein) GLUCOCORTICOID RECEPTOR-INTERACTING PROTEIN 1 (protein)
Unique Ligands	CL, ETC

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1L2J \| pdb_00001l2j	Download File View File

Human Estrogen Receptor beta Ligand-binding Domain in Complex with (R,R)-5,11-cis-diethyl-5,6,11,12-tetrahydrochrysene-2,8-diol

Shiau, A.K., Barstad, D., Radek, J.T., Meyers, M.J., Nettles, K.W., Katzenellenbogen, B.S., Katzenellenbogen, J.A., Agard, D.A., Greene, G.L.

(2002) Nat Struct Biol 9: 359-364

Released	2002-05-01
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	ESTROGEN RECEPTOR BETA (protein)
Unique Ligands	ETC

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1LE2 \| pdb_00001le2	Download File View File

STRUCTURAL BASIS FOR ALTERED FUNCTION IN THE COMMON MUTANTS OF HUMAN APOLIPOPROTEIN-E

Wilson, C., Agard, D.A.

(1994) Structure 2: 713-718

Released	1992-10-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	APOLIPOPROTEIN E2 (protein)

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1LE4 \| pdb_00001le4	Download File View File

STRUCTURAL BASIS FOR ALTERED FUNCTION IN THE COMMON MUTANTS OF HUMAN APOLIPOPROTEIN-E

Wilson, C., Agard, D.A.

(1994) J Biological Chem 269: 22358-22365

Released	1992-10-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	APOLIPOPROTEIN E4 (protein)

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1LPE \| pdb_00001lpe	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE LDL RECEPTOR-BINDING DOMAIN OF HUMAN APOLIPOPROTEIN E

Wilson, C., Agard, D.A.

(1991) Science 252: 1817-1822

Released	1992-10-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	APOLIPOPROTEIN E3 (protein)

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1P01 \| pdb_00001p01	Download File View File

Serine protease mechanism. structure of an inhibitory complex oF ALPHA-LYTIC Protease and a tightly bound peptide boronic acid

Bone, R., Agard, D.A.

(1987) Biochemistry 26: 7609-7614

Released	1990-04-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein)
Unique Ligands	0EG, SO4

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1P02 \| pdb_00001p02	Download File View File

STRUCTURE ANALYSIS OF SPECIFICITY. ALPHA-LYTIC PROTEASE COMPLEXES WITH ANALOGUES OF REACTION INTERMEDIATES

Bone, R., Agard, D.A.

(1989) Biochemistry 28: 7600-7609

Released	1990-04-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

Explore in 3D

1P03 \| pdb_00001p03	Download File View File

STRUCTURE ANALYSIS OF SPECIFICITY. ALPHA-LYTIC PROTEASE COMPLEXES WITH ANALOGUES OF REACTION INTERMEDIATES

Bone, R., Agard, D.A.

(1989) Biochemistry 28: 7600-7609

Released	1990-04-15
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-VALINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1P04 \| pdb_00001p04	Download File View File

STRUCTURE ANALYSIS OF SPECIFICITY. ALPHA-LYTIC PROTEASE COMPLEXES WITH ANALOGUES OF REACTION INTERMEDIATES

Bone, R., Agard, D.A.

(1989) Biochemistry 28: 7600-7609

Released	1990-04-15
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ISOLEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1P05 \| pdb_00001p05	Download File View File

STRUCTURE ANALYSIS OF SPECIFICITY. ALPHA-LYTIC PROTEASE COMPLEXES WITH ANALOGUES OF REACTION INTERMEDIATES

Bone, R., Agard, D.A.

(1989) Biochemistry 28: 7600-7609

Released	1990-04-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-NORLEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1P06 \| pdb_00001p06	Download File View File

STRUCTURE ANALYSIS OF SPECIFICITY. ALPHA-LYTIC PROTEASE COMPLEXES WITH ANALOGUES OF REACTION INTERMEDIATES

Bone, R., Agard, D.A.

(1989) Biochemistry 28: 7600-7609

Released	1990-04-15
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

1 to 25 of 117 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BOQ | pdb_00001boq

1GBA | pdb_00001gba

1GBB | pdb_00001gbb

1GBC | pdb_00001gbc

1GBD | pdb_00001gbd

1GBE | pdb_00001gbe

1GBF | pdb_00001gbf

1GBH | pdb_00001gbh

1GBI | pdb_00001gbi

1GBJ | pdb_00001gbj

1GBK | pdb_00001gbk

1GBL | pdb_00001gbl

1GBM | pdb_00001gbm

1K7B | pdb_00001k7b

1L2I | pdb_00001l2i

1L2J | pdb_00001l2j

1LE2 | pdb_00001le2

1LE4 | pdb_00001le4

1LPE | pdb_00001lpe

1P01 | pdb_00001p01

1P02 | pdb_00001p02

1P03 | pdb_00001p03

1P04 | pdb_00001p04

1P05 | pdb_00001p05

1P06 | pdb_00001p06