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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fass, D."

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Search Summary

This query matches 67 Structures.

Refinements

Structure Determination Methodology

experimental (67)

Scientific Name of Source Organism

	Homo sapiens (31)
	Saccharomyces cerevisiae (11)
	Mus musculus (7)
	Escherichia coli (3)
	Acanthamoeba polyphaga mimivirus (2)
	Autographa californica nucleopolyhedrovirus (2)
	Trypanosoma brucei (2)
	African swine fever virus BA71V (1)
	Arabidopsis thaliana (1)
	Bos taurus (1)

More...

Taxonomy

	Eukaryota (54)
	Bacteria (4)
	Riboviria (4)
	Varidnaviria (3)
	Viruses incertae sedis (2)

Experimental Method

	X-RAY DIFFRACTION (56)
	ELECTRON MICROSCOPY (11)

Polymer Entity Type

	Protein (67)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (13)
	2.0 - 2.5 (26)
	2.5 - 3.0 (13)
	3.0 - 3.5 (7)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (9)
	2000 - 2004 (6)
	2005 - 2009 (6)
	2010 - 2014 (16)
	2015 - 2019 (8)
	2020 - 2024 (22)

Enzyme Classification Name

	Oxidoreductases (28)
	Hydrolases (5)
	Isomerases (4)

Membrane Protein Annotation

	OPM (3)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (40)
	Cyclic (27)
	Dihedral (2)
	Helical (1)

SCOP Classification

	All beta proteins (12)
	All alpha proteins (10)
	Artifacts (9)
	Alpha and beta proteins (a+b) (2)
	Coiled coil proteins (2)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (1)

AllSelected

1 to 25 of 67 Structures

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1A8V \| pdb_00001a8v	Download File View File

STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR

Fass, D., Bogden, C., Berger, J.M.

(1999) Mol Cell 3: 487-493

Released	1999-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	TRANSCRIPTION TERMINATION FACTOR RHO (protein)
Unique Ligands	CU

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1AIK \| pdb_00001aik	Download File View File

HIV GP41 CORE STRUCTURE

Chan, D.C., Fass, D., Berger, J.M., Kim, P.S.

(1997) Cell 89: 263-273

Released	1997-06-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 GP41 GLYCOPROTEIN (protein)

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1AJJ \| pdb_00001ajj	Download File View File

LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING

Fass, D., Blacklow, S.C., Kim, P.S., Berger, J.M.

(1997) Nature 388: 691-693

Released	1997-07-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	LOW-DENSITY LIPOPROTEIN RECEPTOR (protein)
Unique Ligands	CA, SO4

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1AOL \| pdb_00001aol	Download File View File

FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN

Fass, D., Davey, R.A., Hamson, C.A., Kim, P.S., Cunningham, J.M., Berger, J.M.

(1997) Science 277: 1662-1666

Released	1997-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Friend murine leukemia virus
Macromolecule	GP70 (protein)
Unique Ligands	NAG, ZN

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1B79 \| pdb_00001b79	Download File View File

N-TERMINAL DOMAIN OF DNA REPLICATION PROTEIN DNAB

Fass, D., Bogden, C.E., Berger, J.M.

(1999) Structure 7: 691-698

Released	1999-06-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	DnaB Helicase (protein)

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1BJT \| pdb_00001bjt	Download File View File

TOPOISOMERASE II RESIDUES 409-1201

Fass, D., Bogden, C.E., Berger, J.M.

(1999) Nat Struct Biol 6: 322-326

Released	1999-05-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TOPOISOMERASE II (protein)

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1CR5 \| pdb_00001cr5	Download File View File

N-TERMINAL DOMAIN OF SEC18P

Babor, S.M., Fass, D.

(1999) Proc Natl Acad Sci U S A 96: 14759-14764

Released	1999-12-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SEC18P (RESIDUES 22 - 210) (protein)
Unique Ligands	NEN

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1EO6 \| pdb_00001eo6	Download File View File

CRYSTAL STRUCTURE OF GATE-16

Paz, Y., Elazar, Z., Fass, D.

(2000) J Biological Chem 275: 25445-25450

Released	2000-09-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	GOLGI-ASSOCIATED ATPASE ENHANCER OF 16 KD (protein)

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1JR8 \| pdb_00001jr8	Download File View File

Crystal Structure of Erv2p

Gross, E., Sevier, C.S., Vala, A., Kaiser, C.A., Fass, D.

(2002) Nat Struct Biol 9: 61-67

Released	2001-12-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Erv2 PROTEIN, mitochondrial (protein)
Unique Ligands	FAD

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1JRA \| pdb_00001jra	Download File View File

Crystal Structure of Erv2p

Gross, E., Sevier, C.S., Vala, A., Kaiser, C.A., Fass, D.

(2002) Nat Struct Biol 9: 61-67

Released	2001-12-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ERV2 PROTEIN, MITOCHONDRIAL (protein)
Unique Ligands	FAD

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1LCS \| pdb_00001lcs	Download File View File

RECEPTOR-BINDING DOMAIN FROM SUBGROUP B FELINE LEUKEMIA VIRUS

Barnett, A.L., Wensel, D.L., Li, W., Fass, D., Cunningham, J.M.

(2003) J Virol 77: 2717-2729

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Feline leukemia virus strain B/lambda-B1
Macromolecule	FELINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN (protein)
Unique Ligands	TOE
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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1MOF \| pdb_00001mof	Download File View File

COAT PROTEIN

Fass, D., Harrison, S.C., Kim, P.S.

(1996) Nat Struct Biol 3: 465-469

Released	1996-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Moloney murine leukemia virus
Macromolecule	MOLONEY MURINE LEUKEMIA VIRUS P15 (protein)
Unique Ligands	CL

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1RP4 \| pdb_00001rp4	Download File View File

Structure of Ero1p, Source of Disulfide Bonds for Oxidative Protein Folding in the Cell

Gross, E., Kastner, D.B., Kaiser, C.A., Fass, D.

(2004) Cell 117: 601-610

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Hypothetical 65.0 kDa protein in COX14-COS3 intergenic region precursor (protein)
Unique Ligands	CD, FAD, NEN

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1RQ1 \| pdb_00001rq1	Download File View File

Structure of Ero1p, Source of Disulfide Bonds for Oxidative Protein Folding in the Cell

Gross, E., Kastner, D.B., Kaiser, C.A., Fass, D.

(2004) Cell 117: 601-610

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Hypothetical 65.0 kDa protein in COX14-COS3 intergenic region precursor (protein)
Unique Ligands	CD, FAD, NEN

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2A8V \| pdb_00002a8v	Download File View File

RHO TRANSCRIPTION TERMINATION FACTOR/RNA COMPLEX

Bogden, C.E., Fass, D., Bergman, N., Nichols, M.D., Berger, J.M.

(1999) Mol Cell 3: 487-493

Released	1999-04-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Escherichia coli (strain K12)
Macromolecule	RNA BINDING DOMAIN OF RHO TRANSCRIPTION TERMINATION FACTOR (protein) 5'-R(PCPCPC)-3' (nucleic acid) 5'-R(PCPCPCPCPCP*C)-3' (nucleic acid)

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2HJ3 \| pdb_00002hj3	Download File View File

Structure of the Arabidopsis Thaliana Erv1 Thiol Oxidase

Vitu, E., Fass, D.

(2006) J Mol Biology 362: 89-101

Released	2006-08-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Sulfhydryl oxidase Erv1p (protein)
Unique Ligands	FAD, SO4

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2I1A \| pdb_00002i1a	Download File View File

A Retroviral Protease-Like Domain in the Eukaryotic Protein Ddi1

Fass, D., Sirkis, R.

(2006) J Mol Biology 364: 376-387

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA damage-inducible protein DDI1 (protein)

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2IRV \| pdb_00002irv	Download File View File

Crystal structure of GlpG, a rhomboid intramembrane serine protease

Bibi, E., Fass, D., Ben-Shem, A.

(2007) Proc Natl Acad Sci U S A 104: 462-466

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Protein glpG (protein)
Unique Ligands	LDA, LMT, PGV, PO4

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3ED3 \| pdb_00003ed3	Download File View File

Crystal Structure of the Yeast Dithiol/Disulfide Oxidoreductase Mpd1p

Vitu, E., Greenblatt, H.M., Fass, D.

(2008) J Mol Biology 384: 631-640

Released	2008-11-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein disulfide-isomerase MPD1 (protein)
Unique Ligands	ACT, EDO

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3GWL \| pdb_00003gwl	Download File View File

Crystal structure of ASFV pB119L, a viral sulfhydryl oxidase

Hakim, M., Fass, D.

(2009) J Mol Biology 391: 758-768

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	African swine fever virus BA71V
Macromolecule	FAD-linked sulfhydryl oxidase (protein)
Unique Ligands	FAD

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3GWN \| pdb_00003gwn	Download File View File

Crystal structure of the FAD binding domain from mimivirus sulfhydryl oxidase R596

Hakim, M., Fass, D.

(2009) J Mol Biology 391: 758-768

Released	2009-07-07
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Acanthamoeba polyphaga mimivirus
Macromolecule	Probable FAD-linked sulfhydryl oxidase R596 (protein)
Unique Ligands	FAD, GOL, SO4

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3LGO \| pdb_00003lgo	Download File View File

Structure of Gse1p, member of the GSE/EGO complex

Kogan, K., Fass, D.

(2010) J Mol Biology 402: 388-398

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein SLM4 (protein)

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3LLI \| pdb_00003lli	Download File View File

Sulfhydryl Oxidase Fragment of Human QSOX1

Alon, A., Fass, D.

(2010) FEBS Lett 584: 1521-1525

Released	2010-03-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Sulfhydryl oxidase 1 (protein)
Unique Ligands	FAD

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3LLK \| pdb_00003llk	Download File View File

Sulfhydryl Oxidase Fragment of Human QSOX1

Alon, A., Fass, D.

(2010) FEBS Lett 584: 1521-1525

Released	2010-03-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Sulfhydryl oxidase 1 (protein)
Unique Ligands	FAD, FLC

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3M31 \| pdb_00003m31	Download File View File

Structure of the C150A/C295A mutant of S. cerevisiae Ero1p

Heldman, N., Fass, D.

(2010) Protein Sci 19: 1863-1876

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Endoplasmic oxidoreductin-1 (protein)
Unique Ligands	CD, FAD, NEN

1 to 25 of 67 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A8V | pdb_00001a8v

1AIK | pdb_00001aik

1AJJ | pdb_00001ajj

1AOL | pdb_00001aol

1B79 | pdb_00001b79

1BJT | pdb_00001bjt

1CR5 | pdb_00001cr5

1EO6 | pdb_00001eo6

1JR8 | pdb_00001jr8

1JRA | pdb_00001jra

1LCS | pdb_00001lcs

1MOF | pdb_00001mof

1RP4 | pdb_00001rp4

1RQ1 | pdb_00001rq1

2A8V | pdb_00002a8v

2HJ3 | pdb_00002hj3

2I1A | pdb_00002i1a

2IRV | pdb_00002irv

3ED3 | pdb_00003ed3

3GWL | pdb_00003gwl

3GWN | pdb_00003gwn

3LGO | pdb_00003lgo

3LLI | pdb_00003lli

3LLK | pdb_00003llk

3M31 | pdb_00003m31