RCSB PDB: Search

2CYY \| pdb_00002cyy	Download File View File

Crystal structure of PH1519 from Pyrococcus horikosii OT3

Okazaki, N., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Putative HTH-type transcriptional regulator PH1519 (protein)
Unique Ligands	CA, GLN

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2CZ8 \| pdb_00002cz8	Download File View File

Crystal Structure of tt0972 protein from Thermus thermophilus

Kumei, M., Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	tt0972 protein (protein)
Unique Ligands	FAD, K, PO4

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2CZ9 \| pdb_00002cz9	Download File View File

Crystal Structure of galactokinase from Pyrococcus horikoshi

Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Probable galactokinase (protein)
Unique Ligands	CL, GOL

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2D1H \| pdb_00002d1h	Download File View File

Crystal structure of ST1889 protein from thermoacidophilic archaeon Sulfolobus tokodaii

Shinkai, A., Sekine, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) J Mol Biology 372: 1293-1304

Released	2006-09-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	109aa long hypothetical transcriptional regulator (protein)

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2DEG \| pdb_00002deg	Download File View File

Crystal structure of tt0972 protein form Thermus Thermophilus with Mn2(+) ions

Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus
Macromolecule	tt0972 protein (protein)
Unique Ligands	GOL, MN, NA

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2DEH \| pdb_00002deh	Download File View File

Crystal structure of tt0972 protein form Thermus Thermophilus with Cl(-) ions

Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Thermus thermophilus
Macromolecule	tt0972 protein (protein)
Unique Ligands	CL, NA

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2DEI \| pdb_00002dei	Download File View File

Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PNP and galactose

Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Probable galactokinase (protein)
Unique Ligands	GLA, MAP

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2DEJ \| pdb_00002dej	Download File View File

Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PN and galactose

Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Probable galactokinase (protein)
Unique Ligands	APW, GLA

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2DEV \| pdb_00002dev	Download File View File

Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions

Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Thermus thermophilus
Macromolecule	tt0972 protein (protein)
Unique Ligands	CL, CS, NA

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2DJW \| pdb_00002djw	Download File View File

Crystal structure of TTHA0845 from Thermus thermophilus HB8

Okazaki, N., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 855-860

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	probable transcriptional regulator, AsnC family (protein)
Unique Ligands	ZN

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2DSY \| pdb_00002dsy	Download File View File

Crystal structure of TTHA0281 from thermus thermophilus HB8

Okazaki, N., Kumei, M., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 173-177

Released	2007-03-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	Hypothetical protein TTHA0281 (protein)
Unique Ligands	MG, NHE

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2E7W \| pdb_00002e7w	Download File View File

Crystal structure of the Lrp/AsnC like transcriptional regulators from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2E7X \| pdb_00002e7x	Download File View File

Structure of the Lrp/AsnC like transcriptional regulator from Sulfolobus tokodaii 7 complexed with its cognate ligand

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2E85 \| pdb_00002e85	Download File View File

Crystal Structure of the Hydrogenase 3 Maturation protease

Tanaka, T., Kumarevel, T.S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Biochem Biophys Res Commun 389: 310-314

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Hydrogenase 3 maturation protease (protein)
Unique Ligands	CA

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2EB7 \| pdb_00002eb7	Download File View File

Crystal structure of the hypothetical regulator from Sulfolobus tokodaii 7

Kumarevel, T.S., Nishio, M., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Struct Biol 161: 9-17

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	146aa long hypothetical transcriptional regulator (protein)

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2EFN \| pdb_00002efn	Download File View File

Crystal Structure of Ser 32 to Ala of ST1022 from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-02-26
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	MG

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2EFO \| pdb_00002efo	Download File View File

Crystal structure of Tyr77 to Ala of ST1022 from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-02-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	MG

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2EFP \| pdb_00002efp	Download File View File

Crystal Structure of Tyr77 to Ala of ST1022-Glutamine Complex from Sulolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-02-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2EFQ \| pdb_00002efq	Download File View File

Crystal Structure of Thr134 to Ala of ST1022-Glutamine Complex from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2EG1 \| pdb_00002eg1	Download File View File

The crystal structure of PII protein

Sakai, H., Shinkai, A., Kitamura, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	Nitrogen regulatory protein P-II (protein)
Unique Ligands	CL, SO4

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2EG2 \| pdb_00002eg2	Download File View File

The crystal structure of PII protein

Sakai, H., Shinkai, A., Kitamura, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Aquifex aeolicus
Macromolecule	Nitrogen regulatory protein P-II (protein)
Unique Ligands	ATP, CL

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2EG3 \| pdb_00002eg3	Download File View File

Crystal Structure of Probable Thiosulfate Sulfurtransferase

Sakai, H., Ebihara, A., Kitamura, Y., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Probable thiosulfate sulfurtransferase (protein)
Unique Ligands	SO4, ZN

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2EG4 \| pdb_00002eg4	Download File View File

Crystal Structure of Probable Thiosulfate Sulfurtransferase

Sakai, H., Ebihara, A., Kitamura, Y., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Probable thiosulfate sulfurtransferase (protein)
Unique Ligands	SO4, ZN

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2EH3 \| pdb_00002eh3	Download File View File

Crystal structure of aq_1058, a transcriptional regulator (TerR/AcrR family) from Aquifex aeolicus VF5

Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Transcriptional regulator (protein)
Unique Ligands	MG

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2EQA \| pdb_00002eqa	Download File View File

Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii

Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Proteins 70: 1108-1111

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	Hypothetical protein ST1526 (protein)
Unique Ligands	AMP, MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2CYY | pdb_00002cyy

2CZ8 | pdb_00002cz8

2CZ9 | pdb_00002cz9

2D1H | pdb_00002d1h

2DEG | pdb_00002deg

2DEH | pdb_00002deh

2DEI | pdb_00002dei

2DEJ | pdb_00002dej

2DEV | pdb_00002dev

2DJW | pdb_00002djw

2DSY | pdb_00002dsy

2E7W | pdb_00002e7w

2E7X | pdb_00002e7x

2E85 | pdb_00002e85

2EB7 | pdb_00002eb7

2EFN | pdb_00002efn

2EFO | pdb_00002efo

2EFP | pdb_00002efp

2EFQ | pdb_00002efq

2EG1 | pdb_00002eg1

2EG2 | pdb_00002eg2

2EG3 | pdb_00002eg3

2EG4 | pdb_00002eg4

2EH3 | pdb_00002eh3

2EQA | pdb_00002eqa