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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Singh, R."

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Rhodococcus jostii RHA1 (8)
	Homo sapiens (7)
	Mus musculus (7)
	Saccharomyces cerevisiae S288C (5)
	Bacillus subtilis (4)
	Hirudo medicinalis (4)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (3)
	Escherichia coli (3)
	Escherichia coli K-12 (3)
	Lactococcus cremoris (3)

More...

Taxonomy

	Bacteria (30)
	Eukaryota (20)
	Archaea (1)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (45)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (53)
	RNA (11)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (11)
	2.0 - 2.5 (19)
	2.5 - 3.0 (11)
	3.0 - 3.5 (3)
	3.5 - 4.0 (3)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (5)
	2010 - 2014 (14)
	2015 - 2019 (13)
	2020 - 2024 (8)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (20)
	Ligases (7)
	Oxidoreductases (7)
	Transferases (2)

Symmetry Type

	Asymmetric (29)
	Cyclic (16)
	Dihedral (9)

SCOP Classification

	Alpha and beta proteins (a+b) (12)
	Alpha and beta proteins (a/b) (11)
	All beta proteins (7)
	Artifacts (2)
	Small proteins (1)

AllSelected

1 to 25 of 54 Structures

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1EE1 \| pdb_00001ee1	Download File View File

CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH ONE MOLECULE ATP, TWO MOLECULES DEAMIDO-NAD+ AND ONE MG2+ ION

Devedjiev, Y., Symersky, J., Singh, R., Jedrzejas, M., Brouillette, C., Brouillette, W., Muccio, D., Chattopadhyay, D., Delucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) SYNTHETASE (protein)
Unique Ligands	ATP, DND, MG

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1FYD \| pdb_00001fyd	Download File View File

CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH ONE MOLECULE AMP, ONE PYROPHOSPHATE ION AND ONE MG2+ ION

Devedjiev, Y., Symersky, J., Singh, R., Brouillette, W., Muccio, D., Jedrzejas, M., Brouillette, C., DeLucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) SYNTHETASE (protein)
Unique Ligands	AMP, MG, POP

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1IFX \| pdb_00001ifx	Download File View File

CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH TWO MOLECULES DEAMIDO-NAD

Devedjiev, Y., Symersky, J., Singh, R., Brouillette, W., Muccio, D., Jedrzejas, M., Brouillette, C., DeLucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) SYNTHETASE (protein)
Unique Ligands	DND

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1IH8 \| pdb_00001ih8	Download File View File

NH3-dependent NAD+ Synthetase from Bacillus subtilis Complexed with AMP-CPP and Mg2+ ions.

Devedjiev, Y., Symersky, J., Singh, R., Jedrzejas, M., Brouillette, C., Brouillette, W., Muccio, D., Chattopadhyay, D., DeLucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) synthetase (protein)
Unique Ligands	APC, MG

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1MU6 \| pdb_00001mu6	Download File View File

Crystal Structure of Thrombin in Complex with L-378,622

Burgey, C.S., Robinson, K.A., Lyle, T.A., Sanderson, P.E., Lewis, S.D., Lucas, B.J., Krueger, J.A., Singh, R., Miller-Stein, C., White, R.B., Wong, B., Lyle, E.A., Williams, P.D., Coburn, C.A., Dorsey, B.D., Barrow, J.C., Stranieri, M.T., Holahan, M.A., Sitko, G.R., Cook, J.J., McMasters, D.R., McDonough, C.M., Sanders, W.M., Wallace, A.A., Clayton, F.C., Bohn, D., Leonard, Y.M., Detwiler Jr., T.J., Lynch Jr., J.J., Yan, Y., Chen, Z., Kuo, L., Gardell, S.J., Shafer, J.A., Vacca, J.P.J.

(2003) J Med Chem 46: 461-473

Released	2004-04-06
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN IIB (protein) THROMBIN (protein)
Unique Ligands	CDA

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1MU8 \| pdb_00001mu8	Download File View File

thrombin-hirugen_l-378,650

(2003) J Med Chem 46: 461-473

Released	2004-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN IIB (protein) THROMBIN (protein)
Unique Ligands	CDB

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1MUE \| pdb_00001mue	Download File View File

Thrombin-Hirugen-L405,426

Burgey, C.S., Robinson, K.A., Lyle, T.A., Nantermet, P.G., Selnick, H.G., Isaacs, R.C., Lewis, S.D., Lucas, B.J., Krueger, J.A., Singh, R., Miller-Stein, C., White, R.B., Wong, B., Lyle, E.A., Stranieri, M.T., Cook, J.J., McMasters, D.R., Pellicore, J.M., Pal, S., Wallace, A.A., Clayton, F.C., Bohn, D., Welsh, D.C., Lynch, J.J., Yan, Y., Chen, Z., Kuo, L., Gardell, S.J., Shafer, J.A., Vacca, J.P.

(2003) Bioorg Med Chem Lett 13: 1353-1357

Released	2004-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN IIB (protein) THROMBIN (protein)
Unique Ligands	CDD

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1XRZ \| pdb_00001xrz	Download File View File

NMR Structure of a Zinc Finger with Cyclohexanylalanine Substituted for the Central Aromatic Residue

Lachenmann, M.J., Ladbury, J.E., Qian, X., Huang, K., Singh, R., Weiss, M.A.

(2004) Protein Sci 13: 3115-3126

Released	2004-11-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Zinc finger Y-chromosomal protein (protein)
Unique Ligands	ZN

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1ZRB \| pdb_00001zrb	Download File View File

Thrombin in complex with an azafluorenyl inhibitor 23b

Stauffer, K.J., Williams, P.D., Selnick, H.G., Nantermet, P.G., Newton, C.L., Homnick, C.F., Zrada, M.M., Lewis, S.D., Lucas, B.J., Krueger, J.A., Pietrak, B.L., Lyle, E.A., Singh, R., Miller-Stein, C., White, R.B., Wong, B., Wallace, A.A., Sitko, G.R., Cook, J.J., Holahan, M.A., Stranieri-Michener, M., Leonard, Y.M., Lynch Jr., J.J., McMasters, D.R., Yan, Y.

(2005) J Med Chem 48: 2282-2293

Released	2005-06-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	11-peptide hirudin fragment (protein) thrombin (protein)
Unique Ligands	062

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2BM0 \| pdb_00002bm0	Download File View File

Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant T84A

Hansson, S., Singh, R., Gudkov, A.T., Liljas, A., Logan, D.T.

(2005) J Mol Biology 348: 939

Released	2005-05-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus
Macromolecule	ELONGATION FACTOR G (protein)
Unique Ligands	GDP, MG

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2BM1 \| pdb_00002bm1	Download File View File

Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant G16V

Hansson, S., Singh, R., Gudkov, A.T., Liljas, A., Logan, D.T.

(2005) J Mol Biology 348: 939

Released	2005-05-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus
Macromolecule	ELONGATION FACTOR G (protein)
Unique Ligands	GDP, MG

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2BV3 \| pdb_00002bv3	Download File View File

Crystal structure of a mutant elongation factor G trapped with a GTP analogue

Hansson, S., Singh, R., Gudkov, A.T., Liljas, A., Logan, D.T.

(2005) FEBS Lett 579: 4492

Released	2005-08-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus
Macromolecule	ELONGATION FACTOR G (protein)
Unique Ligands	GNP, MG

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2F2K \| pdb_00002f2k	Download File View File

Aldose reductase tertiary complex with NADPH and DEG

Singh, R., White, M.A., Ramana, K.V., Petrash, J.M., Watowich, S.J., Bhatnagar, A., Srivastava, S.K.

(2006) Proteins 64: 101-110

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Aldose reductase (protein)
Unique Ligands	NDP, TGG

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2KYD \| pdb_00002kyd	Download File View File

RDC and RCSA refinement of an A-form RNA: Improvements in Major Groove Width

Tolbert, B.S., Summers, M.F., Miyazaki, Y., Barton, S., Kinde, B., Stark, P., Singh, R., Bax, A., Case, D.

(2010) J Biomol NMR 47: 205-219

Released	2010-07-07
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(CPUPAPGPUPUPAPGPCPUPAPAPCPUPAPG)-3') (nucleic acid)

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3QNR \| pdb_00003qnr	Download File View File

DyPB from Rhodococcus jostii RHA1, crystal form 1

Singh, R., Roberts, J.N., Grigg, J.C., Eltis, L.D., Murphy, M.E.P.

(2011) Biochemistry 50: 5108-5119

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	DyP Peroxidase (protein)
Unique Ligands	FMT, GOL, HEM

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3QNS \| pdb_00003qns	Download File View File

DyPB from Rhodococcus jostii RHA1, crystal form 2

Grigg, J.C., Roberts, J.N., Singh, R., Eltis, L.D., Murphy, M.E.P.

(2011) Biochemistry 50: 5108-5119

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	DyP Peroxidase (protein)
Unique Ligands	GOL, HEM, SO4

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3VEC \| pdb_00003vec	Download File View File

Rhodococcus jostii RHA1 DypB D153A variant in complex with heme

Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.

(2012) J Biological Chem 287: 10623-10630

Released	2012-01-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	DypB (protein)
Unique Ligands	CL, GOL, HEM

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3VED \| pdb_00003ved	Download File View File

Rhodococcus jostii RHA1 DypB D153H variant in complex with heme

Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.

(2012) J Biological Chem 287: 10623-10630

Released	2012-01-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	DypB (protein)
Unique Ligands	CL, GOL, HEM

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3VEE \| pdb_00003vee	Download File View File

Rhodococcus jostii RHA1 DypB N246A variant in complex with heme

Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.

(2012) J Biological Chem 287: 10623-10630

Released	2012-01-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	DypB (protein)
Unique Ligands	CL, FMT, HEM

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3VEF \| pdb_00003vef	Download File View File

Rhodococcus jostii RHA1 DypB N246H variant in complex with heme

Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.

(2012) J Biological Chem 287: 10623-10630

Released	2012-01-18
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	DypB (protein)
Unique Ligands	CL, HEM

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3VEG \| pdb_00003veg	Download File View File

Rhodococcus jostii RHA1 DypB R244L variant in complex with heme

Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.

(2012) J Biological Chem 287: 10623-10630

Released	2012-01-18
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	DypB (protein)
Unique Ligands	CL, HEM

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3ZJT \| pdb_00003zjt	Download File View File

Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation

Cusack, S., Palencia, A., Crepin, T., Hernandez, V., Akama, T., Baker, S.J., Bu, W., Feng, L., Freund, Y.R., Liu, L., Meewan, M., Mohan, M., Mao, W., Rock, F.L., Sexton, H., Sheoran, A., Zhang, Y., Zhang, Y., Zhou, Y., Nieman, J.A., Anugula, M.R., Keramane, E.M., Savariraj, K., Reddy, D.S., Sharma, R., Subedi, R., Singh, R., OLeary, A., Simon, N.L., DeMarsh, P.L., Mushtaq, S., Warner, M., Livermore, D.M., Alley, M.R.K., Plattner, J.J.

(2013) Antimicrob Agents Chemother 57: 1394

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	LEUCYL-TRNA SYNTHETASE (protein) TRNALEU5 UAA ISOACCEPTOR (nucleic acid)
Unique Ligands	MG

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3ZJU \| pdb_00003zju	Download File View File

Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3016 in the editing conformation

(2013) Antimicrob Agents Chemother 57: 1394

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	LEUCYL-TRNA SYNTHETASE (protein) TRNALEU5 UAA ISOACCEPTOR (nucleic acid)
Unique Ligands	MG

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3ZJV \| pdb_00003zjv	Download File View File

Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation

(2013) Antimicrob Agents Chemother 57: 1394

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	LEUCINE--TRNA LIGASE (protein) TRNALEU5 UAA ISOACCEPTOR (nucleic acid)