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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Spicer, L.D."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (12)
	Saccharomyces cerevisiae (5)
	Saccharomyces cerevisiae JAY291 (2)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

Eukaryota (20)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (10)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)

Release Date

	2015 - 2019 (8)
	2020 - 2024 (12)

Enzyme Classification Name

Transferases (8)

Symmetry Type

	Asymmetric (10)
	Cyclic (5)
	Dihedral (6)

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1 to 20 of 20 Structures

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5DQO \| pdb_00005dqo	Download File View File

Crystal structure of Y347F mutant of human primase p58 iron-sulfur cluster domain

Salay, L.E., Thompson, M.K., Chazin, W.J.

(2017) Science 355:

Released	2016-09-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	SF4

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5I7M \| pdb_00005i7m	Download File View File

Crystal structure of Y345F mutant of human primase p58 iron-sulfur cluster domain

Salay, L.E., Thompson, M.K., Chazin, W.J.

(2017) Science 355:

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	SF4, SO4

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6DHW \| pdb_00006dhw	Download File View File

Crystal structure of primase iron-sulfur domain (266-457)

Holt, M.E., Salay, L.E., Chazin, W.J.

(2018) PLoS One 13: e0209345-e0209345

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.013 Å
Organisms	Homo sapiens
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	SF4, SO4

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6DI2 \| pdb_00006di2	Download File View File

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y397L mutant

Salay, L.E., Chazin, W.J.

(2018) Proc Natl Acad Sci U S A 115: 13186-13191

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Saccharomyces cerevisiae JAY291
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	MPD, SF4

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6DI6 \| pdb_00006di6	Download File View File

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain

Salay, L.E., Chazin, W.J.

(2018) Proc Natl Acad Sci U S A 115: 13186-13191

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Saccharomyces cerevisiae JAY291
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	MPD, SF4

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6DTV \| pdb_00006dtv	Download File View File

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y395F mutant

Salay, L.E., Chazin, W.J.

(2018) Proc Natl Acad Sci U S A 115: 13186-13191

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	MPD, SF4

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6DTZ \| pdb_00006dtz	Download File View File

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain, Y397F mutant

Salay, L.E., Chazin, W.J.

(2018) Proc Natl Acad Sci U S A 115: 13186-13191

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	MPD, MRD, SF4

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6DU0 \| pdb_00006du0	Download File View File

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y395L mutant

Salay, L.E., Chazin, W.J.

(2018) Proc Natl Acad Sci U S A 115: 13186-13191

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	GOL, MPD, SF4

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6XQ1 \| pdb_00006xq1	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V74

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6XQ3 \| pdb_00006xq3	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6Y

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6XQ5 \| pdb_00006xq5	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 1

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6M

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6XQ6 \| pdb_00006xq6	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 11

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6P

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6XQ7 \| pdb_00006xq7	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 5

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6V

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6XQ8 \| pdb_00006xq8	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 11

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6M, V6P

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6XQ9 \| pdb_00006xq9	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 13

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, V6M, V6S

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7LML \| pdb_00007lml	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-12-15
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, Y6S

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7LMW \| pdb_00007lmw	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, Y6P

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7TL2 \| pdb_00007tl2	Download File View File

Crystal Structure of Yeast p58C Multi-Tyrosine Mutant 5YF412

Blee, A.M., Salay, L.E., Chazin, W.J.

(2022) Biochemistry 61: 1113-1123

Released	2022-06-29
Method	X-RAY DIFFRACTION 1.529 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	GOL, MPD, SF4

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7TL3 \| pdb_00007tl3	Download File View File

Crystal Structure of Yeast p58C Multi-Tyrosine Mutant 5YF431

Blee, A.M., Salay, L.E., Chazin, W.J.

(2022) Biochemistry 61: 1113-1123

Released	2022-06-29
Method	X-RAY DIFFRACTION 2.066 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	MPD, SF4

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7TL4 \| pdb_00007tl4	Download File View File

Crystal Structure of Yeast p58C Multi-Tyrosine Mutant 6YF

Blee, A.M., Salay, L.E., Chazin, W.J.

(2022) Biochemistry 61: 1113-1123

Released	2022-06-29
Method	X-RAY DIFFRACTION 1.805 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA primase large subunit (protein)
Unique Ligands	MPD, SF4

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5DQO | pdb_00005dqo

Crystal structure of Y347F mutant of human primase p58 iron-sulfur cluster domain

5I7M | pdb_00005i7m

Crystal structure of Y345F mutant of human primase p58 iron-sulfur cluster domain

6DHW | pdb_00006dhw

Crystal structure of primase iron-sulfur domain (266-457)

6DI2 | pdb_00006di2

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y397L mutant

6DI6 | pdb_00006di6

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain

6DTV | pdb_00006dtv

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y395F mutant

6DTZ | pdb_00006dtz

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain, Y397F mutant

6DU0 | pdb_00006du0

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y395L mutant

6XQ1 | pdb_00006xq1

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid

6XQ3 | pdb_00006xq3

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid

6XQ5 | pdb_00006xq5

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 1

6XQ6 | pdb_00006xq6

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 11

6XQ7 | pdb_00006xq7

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 5

6XQ8 | pdb_00006xq8

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 11

6XQ9 | pdb_00006xq9

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 13

7LML | pdb_00007lml

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid

7LMW | pdb_00007lmw

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid

7TL2 | pdb_00007tl2

Crystal Structure of Yeast p58C Multi-Tyrosine Mutant 5YF412

7TL3 | pdb_00007tl3

Crystal Structure of Yeast p58C Multi-Tyrosine Mutant 5YF431

7TL4 | pdb_00007tl4

Crystal Structure of Yeast p58C Multi-Tyrosine Mutant 6YF

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5DQO | pdb_00005dqo

5I7M | pdb_00005i7m

6DHW | pdb_00006dhw

6DI2 | pdb_00006di2

6DI6 | pdb_00006di6

6DTV | pdb_00006dtv

6DTZ | pdb_00006dtz

6DU0 | pdb_00006du0

6XQ1 | pdb_00006xq1

6XQ3 | pdb_00006xq3

6XQ5 | pdb_00006xq5

6XQ6 | pdb_00006xq6

6XQ7 | pdb_00006xq7

6XQ8 | pdb_00006xq8

6XQ9 | pdb_00006xq9

7LML | pdb_00007lml

7LMW | pdb_00007lmw

7TL2 | pdb_00007tl2

7TL3 | pdb_00007tl3

7TL4 | pdb_00007tl4