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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sukumar, N."

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Search Summary

This query matches 47 Structures.

Refinements

Structure Determination Methodology

experimental (47)

Scientific Name of Source Organism

	Aequorea victoria (11)
	Homo sapiens (9)
	Pseudomonas putida (8)
	Gallus gallus (7)
	Paracoccus denitrificans (7)
	Spinacia oleracea (7)
	Takifugu rubripes (5)
	Alcaligenes faecalis (3)
	Lentzea aerocolonigenes (3)
	Mus musculus (3)

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Taxonomy

	Eukaryota (31)
	Bacteria (21)
	Archaea (2)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (47)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (47)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (12)
	2.0 - 2.5 (16)
	2.5 - 3.0 (9)
	3.0 - 3.5 (6)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (8)
	2005 - 2009 (12)
	2010 - 2014 (5)
	2015 - 2019 (3)
	2020 - 2024 (14)

Enzyme Classification Name

	Oxidoreductases (25)
	Hydrolases (14)
	Transferases (3)

Membrane Protein Annotation

	mpstruc (12)
	OPM (11)
	PDBTM (10)
	MemProtMD (1)

Symmetry Type

	Asymmetric (35)
	Cyclic (15)
	Dihedral (2)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a+b) (10)
	Alpha and beta proteins (a/b) (8)
	Small proteins (3)
	All alpha proteins (3)

AllSelected

1 to 25 of 47 Structures

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1F0W \| pdb_00001f0w	Download File View File

CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5

Biswal, B.K., Sukumar, N., Vijayan, M.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1110-1119

Released	2000-06-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1F10 \| pdb_00001f10	Download File View File

CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5 AT 88% RELATIVE HUMIDITY

Biswal, B.K., Sukumar, N., Vijayan, M.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1110-1119

Released	2000-06-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1HSW \| pdb_00001hsw	Download File View File

LYSOZYME (MUCOPEPTIDE N-ACETYLMURAMYL HYDROLASE)

Sukumar, N., Biswal, B.K., Vijayan, M.

(1999) Acta Crystallogr D Biol Crystallogr 55: 934-937

Released	1998-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1HSX \| pdb_00001hsx	Download File View File

LYSOZYME GROWN AT BASIC PH AND ITS LOW HUMIDITY VARIANT

Sukumar, N., Biswal, B.K., Vijayan, M.

(1999) Acta Crystallogr D Biol Crystallogr 55: 934-937

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1HUV \| pdb_00001huv	Download File View File

CRYSTAL STRUCTURE OF A SOLUBLE MUTANT OF THE MEMBRANE-ASSOCIATED (S)-MANDELATE DEHYDROGENASE FROM PSEUDOMONAS PUTIDA AT 2.15A RESOLUTION

Mathews, F.S., Sukumar, N.

(2001) Biochemistry 40: 9870-9878

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pseudomonas putida Spinacia oleracea
Macromolecule	L(+)-MANDELATE DEHYDROGENASE (protein)
Unique Ligands	FMN, MES, SO4

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1JMS \| pdb_00001jms	Download File View File

Crystal Structure of the Catalytic Core of Murine Terminal Deoxynucleotidyl Transferase

Delarue, M., Boule, J.B., Lescar, J., Expert-Bezancon, N., Sukumar, N., Jourdan, N., Rougeon, F., Papanicolaou, C.

(2002) EMBO J 21: 427-439

Released	2002-01-23
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Mus musculus
Macromolecule	TERMINAL DEOXYNUCLEOTIDYLTRANSFERASE (protein)
Unique Ligands	MG, NA

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1KDH \| pdb_00001kdh	Download File View File

Binary Complex of Murine Terminal Deoxynucleotidyl Transferase with a Primer Single Stranded DNA

Delarue, M., Boule, J.B., Lescar, J., Expert-Bezancon, N., Jourdan, N., Sukumar, N., Rougeon, F., Papanicolaou, C.

(2002) EMBO J 21: 427-439

Released	2002-05-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	Terminal deoxynucleotidyltransferase short isoform (protein) 5'-D(P(BRU)P(BRU)P(BRU)P(BRU))-3' (nucleic acid)
Unique Ligands	MG, NA

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1KEJ \| pdb_00001kej	Download File View File

Crystal Structure of Murine Terminal Deoxynucleotidyl Transferase complexed with ddATP

Delarue, M., Boule, J.B., Lescar, J., Expert-Bezancon, N., Jourdan, N., Sukumar, N., Rougeon, F., Papanicolaou, C.

(2002) EMBO J 21: 427-439

Released	2002-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	Terminal deoxynucleotidyltransferase short isoform (protein)
Unique Ligands	CO, DAD, NA

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1P4C \| pdb_00001p4c	Download File View File

High Resolution Structure of Oxidized Active Mutant of (S)-Mandelate Dehydrogenase

Sukumar, N., Mitra, B., Mathews, F.S.

(2004) J Biological Chem 279: 3749-3757

Released	2003-10-28
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Pseudomonas putida Spinacia oleracea
Macromolecule	L(+)-Mandelate Dehydrogenase (protein)
Unique Ligands	FMN, MES, SO4

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1P5B \| pdb_00001p5b	Download File View File

High Resolution Structure of Reduced Active Mutant of (S)-Mandelate Dehydrogenase

Sukumar, N., Mitra, B., Mathews, F.S.

(2004) J Biological Chem 279: 3749-3757

Released	2003-10-28
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Pseudomonas putida Spinacia oleracea
Macromolecule	L(+)-Mandelate Dehydrogenase (protein)
Unique Ligands	FMN, MES, SO4

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1T31 \| pdb_00001t31	Download File View File

A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation

de Garavilla, L., Greco, M.N., Giardino, E.C., Wells, G.I., Haertlein, B.J., Kauffman, J.A., Corcoran, T.W., Derian, C.K., Eckardt, A.J., Abraham, W.M., Sukumar, N., Chen, Z., Pineda, A.O., Mathews, F.S., Di Cera, E., Andrade-Gordon, P., Damiano, B.P., Maryanoff, B.E., Pereira, P.J.B., Wang, Z.M., Rubin, H., Huber, R., Bode, W., Schechter, N.M., Strobl, S.

(2005) J Biological Chem 280: 18001-18007

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Chymase (protein)
Unique Ligands	CO, MES, NAG, OHH, SO4
Unique branched monosaccharides	NAG

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1T32 \| pdb_00001t32	Download File View File

A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation

(2005) J Biological Chem 280: 18001-18007

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin G (protein)
Unique Ligands	OHH, SO4

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1XEI \| pdb_00001xei	Download File View File

THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION

Nagendra, H.G., Sukumar, N., Vijayan, M.

(1998) Proteins 32: 229-240

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1XEJ \| pdb_00001xej	Download File View File

THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION

Nagendra, H.G., Sukumar, N., Vijayan, M.

(1998) Proteins 32: 229-240

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1XEK \| pdb_00001xek	Download File View File

THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION

Nagendra, H.G., Sukumar, N., Vijayan, M.

(1998) Proteins 32: 229-240

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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2A7N \| pdb_00002a7n	Download File View File

Crystal Structure of the G81A mutant of the Active Chimera of (S)-Mandelate Dehydrogenase

Sukumar, N., Xu, Y., Mitra, B., Mathews, F.S.

(2009) Acta Crystallogr D Biol Crystallogr 65: 543-552

Released	2006-07-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas putida Spinacia oleracea
Macromolecule	L(+)-mandelate dehydrogenase (protein)
Unique Ligands	FMN, MES

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2A7P \| pdb_00002a7p	Download File View File

Crystal Structure of the G81A mutant of the Active Chimera of (S)-Mandelate Dehydrogenase in complex with its substrate 3-indolelactate

Sukumar, N., Xu, Y., Mitra, B., Mathews, F.S.

(2009) Acta Crystallogr D Biol Crystallogr 65: 543-552

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas putida Spinacia oleracea
Macromolecule	(S)-Mandelate Dehydrogenase (protein)
Unique Ligands	3IL, FMN, MES

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2A85 \| pdb_00002a85	Download File View File

Crystal Structure of the G81A mutant of the Active Chimera of (S)-Mandelate Dehydrogenase in complex with its substrate 2-hydroxyoctanoate

Sukumar, N., Xu, Y., Mitra, B., Mathews, F.S.

(2009) Acta Crystallogr D Biol Crystallogr 65: 543-552

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas putida Spinacia oleracea
Macromolecule	L(+)-mandelate dehydrogenase (protein)
Unique Ligands	FMN, HOC, MES

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2H3X \| pdb_00002h3x	Download File View File

Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes Faecalis (Form 3)

Sukumar, N., Chen, Z., Leys, D., Scrutton, N.S., Ferrati, D., Merli, A., Rossi, G.L., Bellamy, H.D., Chistoserdov, A., Davidson, V.L., Mathews, F.S.

(2006) Biochemistry 45: 13500-13510

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic Amine Dehydrogenase (protein) Azurin (protein)
Unique Ligands	CU

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2H47 \| pdb_00002h47	Download File View File

Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dephydrogenase and Azurin from Alcaligenes Faecalis (Form 1)

Sukumar, N., Chen, Z., Leys, D., Scrutton, N.S., Ferrati, D., Merli, A., Rossi, G.L., Bellamy, H.D., Chistoserdov, A., Davidson, V.L., Mathews, F.S.

(2006) Biochemistry 45: 13500-13510

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic Amine Dehydrogenase (protein) Azurin (protein)
Unique Ligands	CU

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2IAA \| pdb_00002iaa	Download File View File

Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dephydrogenase and Azurin from Alcaligenes Faecalis (Form 2)

Sukumar, N., Chen, Z., Leys, D., Scrutton, N.S., Ferrati, D., Merli, A., Rossi, G.L., Bellamy, H.D., Chistoserdov, A., Davidson, V.L., Mathews, F.S.

(2006) Biochemistry 45: 13500-13510

Released	2006-11-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic Amine Dehydrogenase (protein) Azurin (protein)
Unique Ligands	CU

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2PMV \| pdb_00002pmv	Download File View File

Crystal Structure of Human Intrinsic Factor- Cobalamin Complex at 2.6 A Resolution

Mathews, F.S., Gordon, M.M., Chen, Z., Rajashankar, K.R., Ealick, S.E., Alpers, D.H., Sukumar, N.

(2007) Proc Natl Acad Sci U S A 104: 17311-17316

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Gastric intrinsic factor (protein)
Unique Ligands	B12
Unique branched monosaccharides	NAG

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3GIY \| pdb_00003giy	Download File View File

Crystal Structures of the G81A Mutant of the Active Chimera of (S)-Mandelate Dehydrogenase and its Complex with Two of its Substrates

Sukumar, N., Dewanti, A., Merli, A., Rossi, G.L., Mitra, B., Mathews, F.S.

(2009) Acta Crystallogr D Biol Crystallogr 65: 543-552

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas putida Spinacia oleracea
Macromolecule	(S)-mandelate dehydrogenase, Peroxisomal (S)-2-hydroxy-acid oxidase (protein)
Unique Ligands	FMN, MES