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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sung, Y.W."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (12)
	Hirudo medicinalis (5)
	Bos taurus (1)
	Theonella sp. (1)

Taxonomy

	Eukaryota (13)
	Eukaryota (eukaryotes) (3)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (4)
	2005 - 2009 (4)
	2010 - 2014 (1)

Enzyme Classification Name

	Hydrolases (11)
	Lyases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (1)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 13 of 13 Structures

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1A4W \| pdb_00001a4w	Download File View File

CRYSTAL STRUCTURES OF THROMBIN WITH THIAZOLE-CONTAINING INHIBITORS: PROBES OF THE S1' BINDING SITE

Matthews, J.H., Krishnan, R., Costanzo, M.J., Maryanoff, B.E., Tulinsky, A.

(1996) Biophys J 71: 2830-2839

Released	1998-04-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUGEN (protein)
Unique Ligands	NA, QWE

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1AY6 \| pdb_00001ay6	Download File View File

THROMBIN INHIBITOR FROM THEONALLA, CYCLOTHEANAMIDE-BASED MACROCYCLIC TRIPEPTIDE MOTIF

Ganesh, V., Maryanoff, B.E., Tulinsky, A.

(1996) Bioorg Med Chem Lett 6: 2947-2952

Released	1998-03-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUGEN (protein) THROMBIN HEAVY CHAIN (protein) THROMBIN LIGHT CHAIN (protein)
Unique Ligands	1ZV

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1DOJ \| pdb_00001doj	Download File View File

Crystal structure of human alpha-thrombin*RWJ-51438 complex at 1.7 A

Recacha, R., Costanzo, M.J., Maryanoff, B.E., Carson, M., DeLucas, L., Chattopadhyay, D.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1395-1400

Released	2000-11-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (protein) HIRUGEN (protein)
Unique Ligands	1Z0, NA, NAG

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1EOU \| pdb_00001eou	Download File View File

CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE II COMPLEXED WITH AN ANTICONVULSANT SUGAR SULFAMATE

Recacha, R., Costanzo, M.J., Maryanoff, B.E., Chattopadhyay, D.

(2002) Biochem J 361: 437-441

Released	2002-02-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE II (CA II) (protein)
Unique Ligands	SMS, ZN

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1KYN \| pdb_00001kyn	Download File View File

Cathepsin-G

Greco, M.N., Hawkins, M.J., Powell, E.T., Almond Jr., H.R., Corcoran, T.W., De Garavilla, L., Kauffman, J.A., Recacha, R., Chattopadhyay, D., Andrade-Gordon, P., Maryanoff, B.E.

(2002) J Am Chem Soc 124: 3810-3811

Released	2002-05-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	cathepsin G (protein)
Unique Ligands	KTP

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1NC6 \| pdb_00001nc6	Download File View File

Potent, small molecule inhibitors of human mast cell tryptase. Anti-asthmatic action of a dipeptide-based transition state analogue containing benzothiazole ketone

Costanzo, M.J., Yabut, S.C., Almond Jr., H.R., Andrade-Gordon, P., Corcoran, T.W., de Garavilla, L., Kauffman, J.A., Abraham, W.M., Recacha, R., Chattopadhyay, D., Maryanoff, B.E.

(2003) J Med Chem 46: 3865-3876

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	Trypsinogen (protein)
Unique Ligands	ABB, CA, SO4

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1T31 \| pdb_00001t31	Download File View File

A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation

de Garavilla, L., Greco, M.N., Giardino, E.C., Wells, G.I., Haertlein, B.J., Kauffman, J.A., Corcoran, T.W., Derian, C.K., Eckardt, A.J., Abraham, W.M., Sukumar, N., Chen, Z., Pineda, A.O., Mathews, F.S., Di Cera, E., Andrade-Gordon, P., Damiano, B.P., Maryanoff, B.E., Pereira, P.J.B., Wang, Z.M., Rubin, H., Huber, R., Bode, W., Schechter, N.M., Strobl, S.

(2005) J Biological Chem 280: 18001-18007

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Chymase (protein)
Unique Ligands	CO, MES, NAG, OHH, SO4
Unique branched monosaccharides	NAG

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1T32 \| pdb_00001t32	Download File View File

A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation

(2005) J Biological Chem 280: 18001-18007

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin G (protein)
Unique Ligands	OHH, SO4

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1TBZ \| pdb_00001tbz	Download File View File

HUMAN THROMBIN WITH ACTIVE SITE N-METHYL-D PHENYLALANYL-N-[5-(AMINOIMINOMETHYL)AMINO]-1-{{BENZOTHIAZOLYL)CARBONYL] BUTYL]-L-PROLINAMIDE TRIFLUROACETATE AND EXOSITE-HIRUGEN

Matthews, J.H., Krishnan, R., Costanzo, M.J., Maryanoff, B.E., Tulinsky, A.

(1996) Biophys J 71: 2830-2839

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (protein) HIRUGEN (protein)
Unique Ligands	00Q, NA

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1TMB \| pdb_00001tmb	Download File View File

MOLECULAR BASIS FOR THE INHIBITION OF HUMAN ALPHA-THROMBIN BY THE MACROCYCLIC PEPTIDE CYCLOTHEONAMIDE A

Qiu, X., Padmanabhan, K.P., Maryanoff, B.E., Tulinsky, A.

(1993) Proc Natl Acad Sci U S A 90: 8048-8052

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Hirudo medicinalis Homo sapiens Theonella sp.
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUGEN (protein) cyclotheonamide A (protein)

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2HVX \| pdb_00002hvx	Download File View File

Discovery of Potent, Orally Active, Nonpeptide Inhibitors of Human Mast Cell Chymase by Using Structure-Based Drug Design

Greco, M.N., Hawkins, M.J., Powell, E.T., Almond, H.R., de Garavilla, L., Wang, Y., Minor, L.A., Wells, G.I., Di Cera, E., Cantwell, A.M., Savvides, S.N., Damiano, B.P., Maryanoff, B.E.

(2007) J Med Chem 50: 1727-1730

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Chymase (protein)
Unique Ligands	DRX

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2OW3 \| pdb_00002ow3	Download File View File

Glycogen synthase kinase-3 beta in complex with bis-(indole)maleimide pyridinophane inhibitor

Zhang, H.C., Bonaga, L.V., Ye, H., Derian, C.K., Damiano, B.P., Maryanoff, B.E.

(2007) Bioorg Med Chem Lett 17: 2863-2868

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	BIM

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3N7O \| pdb_00003n7o	Download File View File

X-ray structure of human chymase in complex with small molecule inhibitor.

Abad, M.C., Kervinen, J., Crysler, C., Bayoumy, S., Spurlino, J., Deckman, I., Greco, M.N., Maryanoff, B.E., Degaravilla, L.

(2010) Biochem Pharmacol 80: 1033-1041

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Chymase (protein)
Unique Ligands	N7O, UNL
Unique branched monosaccharides	NAG

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A4W | pdb_00001a4w

CRYSTAL STRUCTURES OF THROMBIN WITH THIAZOLE-CONTAINING INHIBITORS: PROBES OF THE S1' BINDING SITE

1AY6 | pdb_00001ay6

THROMBIN INHIBITOR FROM THEONALLA, CYCLOTHEANAMIDE-BASED MACROCYCLIC TRIPEPTIDE MOTIF

1DOJ | pdb_00001doj

Crystal structure of human alpha-thrombin*RWJ-51438 complex at 1.7 A

1EOU | pdb_00001eou

CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE II COMPLEXED WITH AN ANTICONVULSANT SUGAR SULFAMATE

1KYN | pdb_00001kyn

Cathepsin-G

1NC6 | pdb_00001nc6

Potent, small molecule inhibitors of human mast cell tryptase. Anti-asthmatic action of a dipeptide-based transition state analogue containing benzothiazole ketone

1T31 | pdb_00001t31

A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation

1T32 | pdb_00001t32

A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation

1TBZ | pdb_00001tbz

HUMAN THROMBIN WITH ACTIVE SITE N-METHYL-D PHENYLALANYL-N-[5-(AMINOIMINOMETHYL)AMINO]-1-{{BENZOTHIAZOLYL)CARBONYL] BUTYL]-L-PROLINAMIDE TRIFLUROACETATE AND EXOSITE-HIRUGEN

1TMB | pdb_00001tmb

MOLECULAR BASIS FOR THE INHIBITION OF HUMAN ALPHA-THROMBIN BY THE MACROCYCLIC PEPTIDE CYCLOTHEONAMIDE A

2HVX | pdb_00002hvx

Discovery of Potent, Orally Active, Nonpeptide Inhibitors of Human Mast Cell Chymase by Using Structure-Based Drug Design

2OW3 | pdb_00002ow3

Glycogen synthase kinase-3 beta in complex with bis-(indole)maleimide pyridinophane inhibitor

3N7O | pdb_00003n7o

X-ray structure of human chymase in complex with small molecule inhibitor.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A4W | pdb_00001a4w

1AY6 | pdb_00001ay6

1DOJ | pdb_00001doj

1EOU | pdb_00001eou

1KYN | pdb_00001kyn

1NC6 | pdb_00001nc6

1T31 | pdb_00001t31

1T32 | pdb_00001t32

1TBZ | pdb_00001tbz

1TMB | pdb_00001tmb

2HVX | pdb_00002hvx

2OW3 | pdb_00002ow3

3N7O | pdb_00003n7o