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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Vuckovic, M."

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Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Escherichia coli (16)
	Severe acute respiratory syndrome coronavirus 2 (12)
	Salmonella enterica subsp. enterica serovar Typhimurium (9)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (5)
	Escherichia coli O127:H6 str. E2348/69 (4)
	Klebsiella pneumoniae (3)
	Staphylococcus aureus (3)
	Staphylococcus aureus subsp. aureus MRSA252 (3)
	Streptococcus pneumoniae R6 (1)

Taxonomy

	Bacteria (44)
	Riboviria (12)

Experimental Method

	X-RAY DIFFRACTION (43)
	ELECTRON MICROSCOPY (12)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (56)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (20)
	2.0 - 2.5 (8)
	2.5 - 3.0 (5)
	3.0 - 3.5 (7)
	3.5 - 4.0 (4)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	2005 - 2009 (17)
	2010 - 2014 (6)
	2015 - 2019 (15)
	2020 - 2024 (18)

Enzyme Classification Name

	Hydrolases (19)
	Transferases (4)
	Translocases (4)

Membrane Protein Annotation

	mpstruc (12)
	OPM (5)
	PDBTM (4)
	MemProtMD (1)

Symmetry Type

	Cyclic (31)
	Asymmetric (25)
	Dihedral (7)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	Multi-domain proteins (alpha and beta) (6)

AllSelected

1 to 25 of 56 Structures

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1YJ7 \| pdb_00001yj7	Download File View File

Crystal structure of enteropathogenic E.coli (EPEC) type III secretion system protein EscJ

Yip, C.K., Kimbrough, T.G., Felise, H.B., Vuckovic, M., Thomas, N.A., Pfuetzner, R.A., Frey, E.A., Finlay, B.B., Miller, S.I., Strynadka, N.C.J.

(2005) Nature 435: 702-707

Released	2005-06-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	escJ (protein)
Unique Ligands	GOL, PO4

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2OBL \| pdb_00002obl	Download File View File

Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria

Zarivach, R., Vuckovic, M., Deng, W., Finlay, B.B., Strynadka, N.C.J.

(2007) Nat Struct Mol Biol 14: 131-137

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli O127:H6 str. E2348/69
Macromolecule	EscN (protein)
Unique Ligands	ACT, CA, IMD

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2OBM \| pdb_00002obm	Download File View File

Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria

Zarivach, R., Vuckovic, M., Deng, W., Finlay, B.B., Strynadka, N.C.J.

(2007) Nat Struct Mol Biol 14: 131-137

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli O127:H6 str. E2348/69
Macromolecule	EscN (protein)
Unique Ligands	ADP, CA

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2X49 \| pdb_00002x49	Download File View File

Crystal structure of the C-terminal domain of InvA

Worrall, L.J., Vuckovic, M., Strynadka, N.C.J.

(2010) Protein Sci 19: 1091

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	INVASION PROTEIN INVA (protein)
Unique Ligands	CA, HG, PEG

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2X4A \| pdb_00002x4a	Download File View File

Crystal structure of the C-terminal domain of InvA

Worrall, L.J., Vuckovic, M., Strynadka, N.C.J.

(2010) Protein Sci 19: 1091

Released	2010-05-05
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	INVASION PROTEIN INVA (protein)
Unique Ligands	CXS, PO4

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3BZL \| pdb_00003bzl	Download File View File

Crystal structural of native EscU C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)
Unique Ligands	FMT, NA

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3BZO \| pdb_00003bzo	Download File View File

Crystal structural of native EscU C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)
Unique Ligands	SO4

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3BZP \| pdb_00003bzp	Download File View File

Crystal structural of the mutated N262A EscU C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.499 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)

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3BZR \| pdb_00003bzr	Download File View File

Crystal structure of EscU C-terminal domain with N262D mutation, Space group P 41 21 2

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.646 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)

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3BZS \| pdb_00003bzs	Download File View File

Crystal structure of EscU C-terminal domain with N262D mutation, Space group P 21 21 21

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)

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3BZT \| pdb_00003bzt	Download File View File

Crystal structural of the mutated P263A EscU C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)

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3BZV \| pdb_00003bzv	Download File View File

Crystal structural of the mutated T264A EscU C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)

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3BZX \| pdb_00003bzx	Download File View File

Crystal structure of the mutated H265A EscU C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)
Unique Ligands	SO4

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3BZY \| pdb_00003bzy	Download File View File

Crystal structure of the mutated Y316D EscU C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)
Unique Ligands	SO4

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3BZZ \| pdb_00003bzz	Download File View File

Crystal structural of the mutated R313T EscU/SpaS C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.407 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)

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3C00 \| pdb_00003c00	Download File View File

Crystal structural of the mutated G247T EscU/SpaS C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)

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3C01 \| pdb_00003c01	Download File View File

Crystal structural of native SpaS C-terminal domain

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Surface presentation of antigens protein spaS (protein)
Unique Ligands	CYS, MPD, SO4

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3C03 \| pdb_00003c03	Download File View File

Crystal structure of the EscU C-terminal domain with P263A mutation,space group P 1 21 1

Zarivach, R., Deng, W., Vuckovic, M., Felise, H.B., Nguyen, H.V., Miller, S.I., Finlay, B.B., Strynadka, N.C.J.

(2008) Nature 453: 124-127

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	EscU (protein)
Unique Ligands	PRO

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3ECQ \| pdb_00003ecq	Download File View File

Endo-alpha-N-acetylgalactosaminidase from Streptococcus pneumoniae: SeMet structure

Caines, M.E.C., Zhu, H., Vuckovic, M., Strynadka, N.C.J.

(2008) J Biological Chem 283: 31279-31283

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	Endo-alpha-N-acetylgalactosaminidase (protein)
Unique Ligands	CA, GOL, NA

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3T05 \| pdb_00003t05	Download File View File

Crystal structure of S. aureus Pyruvate Kinase

Worrall, L.J., Vuckovic, M., Strynadka, N.C.J.

(2011) J Biological Chem 286: 44716-44725

Released	2011-10-26
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Pyruvate kinase (protein)
Unique Ligands	PO4

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3T07 \| pdb_00003t07	Download File View File

Crystal structure of S. aureus Pyruvate Kinase in complex with a naturally occurring bis-indole alkaloid

Worrall, L.J., Vuckovic, M., Strynadka, N.C.J.

(2011) J Biological Chem 286: 44716-44725

Released	2011-10-26
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Pyruvate kinase (protein)
Unique Ligands	09C, PO4

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3T0T \| pdb_00003t0t	Download File View File

Crystal structure of S. aureus Pyruvate Kinase

Worrall, L.J., Vuckovic, M., Strynadka, N.C.J.

(2012) ACS Chem Biol 7: 350-359

Released	2012-06-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Pyruvate kinase (protein)
Unique Ligands	I30, PO4

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4G2S \| pdb_00004g2s	Download File View File

Crystal structure of a Salmonella type III secretion system protein

Worrall, L.J., Vuckovic, M., Strynadka, N.C.J.

(2013) PLoS Pathog 9: e1003307-e1003307

Released	2013-05-15
Method	X-RAY DIFFRACTION 1.858 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Protein prgH (protein)
Unique Ligands	CA