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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Barbar, E."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Drosophila melanogaster (11)
	Pyrenophora tritici-repentis (2)
	Saccharomyces cerevisiae S288C (2)
	Thermochaetoides thermophila DSM 1495 (2)
	Escherichia coli K-12 (1)
	Thermochaetoides thermophila (1)

Taxonomy

	Eukaryota (18)
	Eukaryota (eukaryotes) (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (12)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (8)
	2015 - 2019 (2)
	2020 - 2024 (2)

Symmetry Type

	Asymmetric (9)
	Cyclic (10)

SCOP Classification

Alpha and beta proteins (a+b) (9)

AllSelected

1 to 18 of 18 Structures

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1RHW \| pdb_00001rhw	Download File View File

The solution structure of the pH-induced monomer of dynein light chain LC8 from Drosophila

Makokha, M., Huang, Y.J., Montelione, G., Edison, A.S., Barbar, E.

(2004) Protein Sci 13: 727-734

Released	2004-04-27
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Dynein light chain 1, cytoplasmic (protein)

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2MM0 \| pdb_00002mm0	Download File View File

Solution Structures of active Ptr ToxB and its inactive homolog highlight protein dynamics as a modulator of toxin activity

Nyarko, A., Singarapu, K., Figueroa, M., Manning, V., Pandelova, I., Wolpert, T., Ciuffetti, L., Barbar, E.

(2014) J Biological Chem 289: 25946-25956

Released	2014-08-06
Method	SOLUTION NMR
Organisms	Pyrenophora tritici-repentis
Macromolecule	Host-selective toxin protein (protein)

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2MM2 \| pdb_00002mm2	Download File View File

Solution Structures of Active Ptr ToxB and its inactive Homolog highlight Protein Dynamics as a Modulator of Toxin activity.

Barbar, E., Nyarko, A.

(2014) J Biological Chem 289: 25946-25956

Released	2014-08-06
Method	SOLUTION NMR
Organisms	Pyrenophora tritici-repentis
Macromolecule	Toxb (protein)

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2MVF \| pdb_00002mvf	Download File View File

Structural insight into an essential assembly factor network on the pre-ribosome

Lee, W., Bassler, J., Paternoga, H., Holdermann, I., Thomas, M., Granneman, S., Barrio-Garcia, C., Nyarko, A., Stier, G., Clark, S.A., Schraivogel, D., Kallas, M., Beckmann, R., Tollervey, D., Barbar, E., Sinning, I., Hurt, E.

(2014) J Cell Biol 207: 481-498

Released	2014-12-03
Method	SOLUTION NMR
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Uncharacterized protein (protein)

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2P2T \| pdb_00002p2t	Download File View File

Crystal structure of dynein light chain LC8 bound to residues 123-138 of intermediate chain IC74

Benison, G., Karplus, P.A., Barbar, E.

(2007) J Mol Biology 371: 457-468

Released	2008-01-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein intermediate chain peptide (protein) Dynein light chain 1, cytoplasmic (protein)
Unique Ligands	ACT, NA

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3BRI \| pdb_00003bri	Download File View File

Crystal Structure of apo-LC8

Benison, G., Karplus, P.A., Barbar, E., Chiodo, M.

(2008) J Mol Biology 384: 954-966

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein light chain 1, cytoplasmic (protein)
Unique Ligands	ACT, SO4

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3E2B \| pdb_00003e2b	Download File View File

Crystal structure of Dynein Light chain LC8 in complex with a peptide derived from Swallow

Benison, G., Barbar, E., Karplus, P.A.

(2008) J Mol Biology 384: 954-966

Released	2008-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein light chain 1, cytoplasmic (protein) Protein swallow 16-residue peptide (protein)
Unique Ligands	ACT

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3FM7 \| pdb_00003fm7	Download File View File

Quaternary Structure of Drosophila melanogaster IC/Tctex-1/LC8; Allosteric Interactions of Dynein Light Chains with Dynein Intermediate Chain

Hall, J.D., Karplus, P.A., Barbar, E.J.

(2009) J Biological Chem 284: 33115-33121

Released	2009-09-15
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein intermediate chain, cytosolic (protein) Dynein light chain 1, cytoplasmic (protein) Dynein light chain Tctex-type (protein)

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3GLW \| pdb_00003glw	Download File View File

Quaternary Structure of Drosophila melanogaster IC/Tctex-1/LC8; Allosteric Interactions of Dynein Light Chains with Dynein Intermediate Chain

Hall, J.D., Karplus, P.A., Barbar, E.J.

(2009) J Biological Chem 284: 33115-33121

Released	2009-09-15
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein intermediate Chain (protein) Dynein light chain 1, cytoplasmic (protein)

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3L7H \| pdb_00003l7h	Download File View File

Insights into dynein assembly from a dynein intermediate chain light chain Roadblock structure

Hall, J., Karplus, P.A., Barbar, E.

To be published

Released	2010-05-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Drosophila melanogaster
Macromolecule	RE64145p (protein)

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3L9K \| pdb_00003l9k	Download File View File

Insights into dynein assembly from a dynein intermediate chain-light chain roadblock structure

Hall, J., Karplus, P.A., Barbar, E.

To be published

Released	2010-05-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein intermediate chain, cytosolic (protein) RE64145p (protein)

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4WJS \| pdb_00004wjs	Download File View File

Crystal structure of Rsa4 from Chaetomium thermophilum

Holdermann, I., Bassler, J., Hurt, E., Sinning, I.

(2014) J Cell Biol 207: 481-498

Released	2014-11-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermochaetoides thermophila
Macromolecule	Rsa4 (protein)

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4WJU \| pdb_00004wju	Download File View File

Crystal structure of Rsa4 from Saccharomyces cerevisiae

Holdermann, I., Bassler, J., Hurt, E., Sinning, I.

(2014) J Cell Biol 207: 481-498

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ribosome assembly protein 4 (protein)
Unique Ligands	GOL

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4WJV \| pdb_00004wjv	Download File View File

Crystal structure of Rsa4 in complex with the Nsa2 binding peptide

Holdermann, I., Paternoga, H., Bassler, J., Hurt, E., Sinning, I.

(2014) J Cell Biol 207: 481-498

Released	2014-11-19
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli K-12 Saccharomyces cerevisiae S288C
Macromolecule	Maltose-binding periplasmic protein (protein) Ribosome assembly protein 4 (protein) Ribosome biogenesis protein NSA2 (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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5E0L \| pdb_00005e0l	Download File View File

LC8 - Chica (415-424) Complex

Clark, S.A., Barbar, E.B., Karplus, P.A.

(2016) Biochemistry 55: 199-209

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein light chain 1, cytoplasmic (protein) Protein Chica peptide (protein)
Unique Ligands	SO4

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5E0M \| pdb_00005e0m	Download File View File

LC8 - Chica (468-476) Complex

Clark, S.A., Barbar, E.B., Karplus, P.A.

(2016) Biochemistry 55: 199-209

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Drosophila melanogaster
Macromolecule	Dynein light chain 1, cytoplasmic (protein) Protein Chica peptide (protein)
Unique Ligands	SO4

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6PQT \| pdb_00006pqt	Download File View File

N-terminal domain of dynein intermediate chain from Chaetomium thermophilum

Loening, N.M., Barbar, E.

(2020) Biophys J 119: 950-965

Released	2020-08-19
Method	SOLUTION NMR
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Dynein intermediate chain protein (protein)

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6XOR \| pdb_00006xor	Download File View File

Structure of the Self-Association Domain of Swallow

Loening, N.M., Barbar, E.

(2021) Protein Sci 30: 1056-1063

Released	2021-03-24
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Protein swallow (protein)

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1RHW | pdb_00001rhw

The solution structure of the pH-induced monomer of dynein light chain LC8 from Drosophila

2MM0 | pdb_00002mm0

Solution Structures of active Ptr ToxB and its inactive homolog highlight protein dynamics as a modulator of toxin activity

2MM2 | pdb_00002mm2

Solution Structures of Active Ptr ToxB and its inactive Homolog highlight Protein Dynamics as a Modulator of Toxin activity.

2MVF | pdb_00002mvf

Structural insight into an essential assembly factor network on the pre-ribosome

2P2T | pdb_00002p2t

Crystal structure of dynein light chain LC8 bound to residues 123-138 of intermediate chain IC74

3BRI | pdb_00003bri

Crystal Structure of apo-LC8

3E2B | pdb_00003e2b

Crystal structure of Dynein Light chain LC8 in complex with a peptide derived from Swallow

3FM7 | pdb_00003fm7

Quaternary Structure of Drosophila melanogaster IC/Tctex-1/LC8; Allosteric Interactions of Dynein Light Chains with Dynein Intermediate Chain

3GLW | pdb_00003glw

Quaternary Structure of Drosophila melanogaster IC/Tctex-1/LC8; Allosteric Interactions of Dynein Light Chains with Dynein Intermediate Chain

3L7H | pdb_00003l7h

Insights into dynein assembly from a dynein intermediate chain light chain Roadblock structure

3L9K | pdb_00003l9k

Insights into dynein assembly from a dynein intermediate chain-light chain roadblock structure

4WJS | pdb_00004wjs

Crystal structure of Rsa4 from Chaetomium thermophilum

4WJU | pdb_00004wju

Crystal structure of Rsa4 from Saccharomyces cerevisiae

4WJV | pdb_00004wjv

Crystal structure of Rsa4 in complex with the Nsa2 binding peptide

5E0L | pdb_00005e0l

LC8 - Chica (415-424) Complex

5E0M | pdb_00005e0m

LC8 - Chica (468-476) Complex

6PQT | pdb_00006pqt

N-terminal domain of dynein intermediate chain from Chaetomium thermophilum

6XOR | pdb_00006xor

Structure of the Self-Association Domain of Swallow

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1RHW | pdb_00001rhw

2MM0 | pdb_00002mm0

2MM2 | pdb_00002mm2

2MVF | pdb_00002mvf

2P2T | pdb_00002p2t

3BRI | pdb_00003bri

3E2B | pdb_00003e2b

3FM7 | pdb_00003fm7

3GLW | pdb_00003glw

3L7H | pdb_00003l7h

3L9K | pdb_00003l9k

4WJS | pdb_00004wjs

4WJU | pdb_00004wju

4WJV | pdb_00004wjv

5E0L | pdb_00005e0l

5E0M | pdb_00005e0m

6PQT | pdb_00006pqt

6XOR | pdb_00006xor