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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gogliotti, R.D."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

Homo sapiens (31)

Taxonomy

Eukaryota (31)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (19)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (11)
	2020 - 2024 (14)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (23)
	Dihedral (6)
	Cyclic (2)

SCOP Classification

	All beta proteins (7)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (6)
	Artifacts (3)

AllSelected

1 to 25 of 31 Structures

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Explore in 3D

4OG3 \| pdb_00004og3	Download File View File

Human menin with bound inhibitor MIV-3R

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2S6, DMS, PEG, PG4, SO4

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4OG4 \| pdb_00004og4	Download File View File

Human menin with bound inhibitor MIV-3S

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2VK, DMS, PEG, PG4, PGE, SO4, TBF

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4OG5 \| pdb_00004og5	Download File View File

Human menin with bound inhibitor MIV-5

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2S7, DMS, PEG, PG4, SO4, TBF

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4OG6 \| pdb_00004og6	Download File View File

Human menin with bound inhibitor MIV-4

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2S9, DMS, PEG, PG4, SO4

Explore in 3D

4OG7 \| pdb_00004og7	Download File View File

Human menin with bound inhibitor MIV-7

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2SE, DMS, PEG, PGE, SO4

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4OG8 \| pdb_00004og8	Download File View File

Human menin with bound inhibitor MIV-6R

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2SF, DMS, PG4, PGA, SO4, TBF

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6D9X \| pdb_00006d9x	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	FZM, NA

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6DAI \| pdb_00006dai	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, G2V

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6DAK \| pdb_00006dak	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, G1Y

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6DAR \| pdb_00006dar	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, G2J, SO4

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6DAS \| pdb_00006das	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	G2D

Explore in 3D

6DY7 \| pdb_00006dy7	Download File View File

WDR5 in complex with a WIN site inhibitor

Phan, J., Wang, F., Fesik, S.W.

(2019) Cell Rep 26: 2916-2928.e13

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, HH7, SO4

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6DYA \| pdb_00006dya	Download File View File

WDR5 in complex with a WIN site inhibitor

Phan, J., Wang, F., Fesik, S.W.

(2019) Cell Rep 26: 2916-2928.e13

Released	2019-03-13
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, HHM, SO4

Explore in 3D

6E1Y \| pdb_00006e1y	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2019) Cell Rep 26: 2916-2928.e13

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.219 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	HLM

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6E1Z \| pdb_00006e1z	Download File View File

Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity

Phan, J., Fesik, S.W.

(2019) Cell Rep 26: 2916-2928.e13

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	HLP

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6E22 \| pdb_00006e22	Download File View File

Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity

Phan, J., Fesik, S.W.

(2019) Cell Rep 26: 2916-2928.e13

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	HLS, SO4

Explore in 3D

6E23 \| pdb_00006e23	Download File View File

Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity

Phan, J., Fesik, S.W.

(2019) Cell Rep 26: 2916-2928.e13

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	EPE, HLJ

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6UCS \| pdb_00006ucs	Download File View File

Discovery and Structure-Based optimization of potent and selective WDR5 inhibitors containing a dihydroisoquinolinone bicyclic core

Zhao, B.

(2020) J Med Chem 63: 656-675

Released	2020-01-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	Q41

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6UFX \| pdb_00006ufx	Download File View File

WD repeat-containing protein 5 complexed with N-[(3,5-dimethoxyphenyl)methyl]-4'-fluoro-5-{[(2E)-2-imino-3-methyl-2,3-dihydro-1H-imidazol-1-yl]methyl}-2'-methyl[1,1'-biphenyl]-3-carboxamide (compound 13)

Rietz, T.A., Fesik, S.W., Zhao, B.

(2020) J Med Chem 63: 656-675

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.015 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	Q6S

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6XQ1 \| pdb_00006xq1	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V74

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6XQ3 \| pdb_00006xq3	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6Y

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6XQ5 \| pdb_00006xq5	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 1

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6M

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6XQ6 \| pdb_00006xq6	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 11

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6P

Explore in 3D

6XQ7 \| pdb_00006xq7	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 5

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6V

Explore in 3D

6XQ8 \| pdb_00006xq8	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 11

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6M, V6P

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4OG3 | pdb_00004og3

4OG4 | pdb_00004og4

4OG5 | pdb_00004og5

4OG6 | pdb_00004og6

4OG7 | pdb_00004og7

4OG8 | pdb_00004og8

6D9X | pdb_00006d9x

6DAI | pdb_00006dai

6DAK | pdb_00006dak

6DAR | pdb_00006dar

6DAS | pdb_00006das

6DY7 | pdb_00006dy7

6DYA | pdb_00006dya

6E1Y | pdb_00006e1y

6E1Z | pdb_00006e1z

6E22 | pdb_00006e22

6E23 | pdb_00006e23

6UCS | pdb_00006ucs

6UFX | pdb_00006ufx

6XQ1 | pdb_00006xq1

6XQ3 | pdb_00006xq3

6XQ5 | pdb_00006xq5

6XQ6 | pdb_00006xq6

6XQ7 | pdb_00006xq7

6XQ8 | pdb_00006xq8