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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "James, P."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Haliangium ochraceum DSM 14365 (3)
	Archaeoglobus fulgidus DSM 4304 (2)
	Carboxydothermus hydrogenoformans (2)
	Geoglobus acetivorans (2)
	Thermovibrio ammonificans (2)
	Archaeoglobus veneficus SNP6 (1)
	Rhodopseudomonas palustris CGA009 (1)
	Thermovibrio ammonificans HB-1 (1)
	uncultured bacterium (1)

Taxonomy

	Bacteria (10)
	Archaea (5)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (3)
	2015 - 2019 (4)
	2020 - 2024 (7)

Enzyme Classification Name

	Transferases (6)
	Lyases (3)
	Oxidoreductases (2)

Symmetry Type

	Dihedral (7)
	Cyclic (6)
	Asymmetric (1)
	Icosahedral (1)

SCOP Classification

	Multi-domain proteins (alpha and beta) (4)
	All beta proteins (3)

AllSelected

1 to 15 of 15 Structures

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2JS3 \| pdb_00002js3	Download File View File

NMR Structure of protein Q6N9A4_RHOPA. Northeast Structural Genomics Consortium target RpT8

Singarapu, K.K., Wu, Y., Yee, A., Eletsky, A., Sukumaran, D., Garcia, M., Xiao, R., Bansal, S., Baran, M.C., Montelione, G.T., James, P.H., Arrowsmith, C.H., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-07-31
Method	SOLUTION NMR
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

4C3T \| pdb_00004c3t	Download File View File

The Carbonic anhydrase from Thermovibrio ammonificans reveals an interesting intermolecular disulfide contributing to increasing thermal stability of this enzyme

James, P., Isupov, M., Sayer, C., Berg, S., Lioliou, M., Kotlar, H., Littlechild, J.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2607

Released	2014-09-10
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Thermovibrio ammonificans
Macromolecule	CARBONATE DEHYDRATASE (protein)
Unique Ligands	CL, ZN

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4COQ \| pdb_00004coq	Download File View File

The complex of alpha-Carbonic anhydrase from Thermovibrio ammonificans with inhibitor sulfanilamide.

James, P., Isupov, M.N., Sayer, C., Berg, S., Lioliou, M., Kotlar, H., Littlechild, J.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2607

Released	2014-10-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermovibrio ammonificans HB-1
Macromolecule	CARBONATE DEHYDRATASE (protein)
Unique Ligands	CL, PG4, PG6, PGE, SAN, ZN

Explore in 3D

4UOV \| pdb_00004uov	Download File View File

The structure of a tetrameric alpha-carbonic anhydrase from Thermovibrio ammonificans reveals a core formed around intermolecular disulfides, which contribute to its thermostability.

James, P., Isupov, M., Sayer, C., Berg, S., Lioliou, M., Kotlar, H., Littlechild, J.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2607

Released	2014-10-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermovibrio ammonificans
Macromolecule	CARBONATE DEHYDRATASE (protein)
Unique Ligands	AZM, B3P, CL, PE3, PEG, PG5, PGE, SO4, TLA, ZN

Explore in 3D

5CM0 \| pdb_00005cm0	Download File View File

Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans

Boyko, K.M., Nikolaeva, A.Y., Stekhanova, T.N., Mardanov, A.V., Rakitin, A.L., Ravin, N.V., Popov, V.O.

(2019) Front Bioeng Biotechnol 7: 7-7

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geoglobus acetivorans
Macromolecule	Branched-chain transaminase (protein)
Unique Ligands	GOL, PLP

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5E25 \| pdb_00005e25	Download File View File

Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans complexed with alpha-ketoglutarate

Boyko, K.M., Nikolaeva, A.Y., Stekhanova, T.N., Mardanov, A.V., Rakitin, A.L., Ravin, N.V., Popov, V.O.

(2019) Front Bioeng Biotechnol 7: 7-7

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geoglobus acetivorans
Macromolecule	branched-chain aminotransferase (protein)
Unique Ligands	AKG, PLP

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5MQZ \| pdb_00005mqz	Download File View File

Archaeal branched-chain amino acid aminotransferase from Archaeoglobus fulgidus; holoform

James, P., Isupov, M.N., Sayer, C., Littlechild, J.A., Sutter, J.M., Schmidt, M., Schoenheit, P.

(2019) Front Bioeng Biotechnol 7: 7-7

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Putative branched-chain-amino-acid aminotransferase (protein)
Unique Ligands	CL, EDO, PEG, TAM

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5MR0 \| pdb_00005mr0	Download File View File

Thermophilic archaeal branched-chain amino acid transaminases from Geoglobus acetivorans and Archaeoglobus fulgidus: biochemical and structural characterisation

Isupov, M.N., Littlechild, J.A., James, P., Sayer, C., Sutter, J.M., Schmidt, M., Schoenheit, P.

(2019) Front Bioeng Biotechnol 7: 7-7

Released	2018-01-17
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Putative branched-chain-amino-acid aminotransferase (protein)
Unique Ligands	CL, EDO, PEG, PXG, TAM

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6YAJ \| pdb_00006yaj	Download File View File

Split gene transketolase, inactive beta4 tetramer

Isupov, M.N., Littlechild, J.A., James, P.

(2020) Front Microbiol 11: 592353-592353

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Carboxydothermus hydrogenoformans
Macromolecule	C-terminal chain of split transketolase from Carboxydothermus hydrogenoformans (protein)
Unique Ligands	EDO, GOL, PEG

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6YAK \| pdb_00006yak	Download File View File

Split gene transketolase, active alpha2beta2 heterotetramer

Isupov, M.N., Littlechild, J.A., James, P.

(2020) Front Microbiol 11: 592353-592353

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Carboxydothermus hydrogenoformans
Macromolecule	C-terminal component of the split chain transketolase (protein) N-terminal component of the split chain transketolase (protein)
Unique Ligands	8EL, CA, CL, LMR, MLT

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7B0D \| pdb_00007b0d	Download File View File

Sugar transaminase from Archaeoglobus veneficus

James, P., Littlechild, J.A., De Rose, S.A., Isupov, M.N.

To be published

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Archaeoglobus veneficus SNP6
Macromolecule	Glutamine--scyllo-inositol transaminase (protein)
Unique Ligands	CA, EDO, PEG, PO4, TRS

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7B0M \| pdb_00007b0m	Download File View File

Sugar transaminase from a metagenome collected from troll oil field production water

Littlechild, J.A., De Rose, S.A., Isupov, M.N., Sayer, C., Karki, S.

To be published

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	uncultured bacterium
Macromolecule	Sugar aminotransferase (protein)
Unique Ligands	EDO, PEG, PG4

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7ODW \| pdb_00007odw	Download File View File

Model of Haliangium ochraceum encapsulin from icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-03-09
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Linocin_M18 bacteriocin protein (protein)

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7OE2 \| pdb_00007oe2	Download File View File

Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-02-09
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Haliangium ochraceum Encapsulated ferritin localisation sequence (protein) Linocin_M18 bacteriocin protein (protein)

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7OEU \| pdb_00007oeu	Download File View File

Model of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-02-09
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Haliangium ochraceum encapsulated ferritin (protein) Linocin_M18 bacteriocin protein (protein)

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2JS3 | pdb_00002js3

NMR Structure of protein Q6N9A4_RHOPA. Northeast Structural Genomics Consortium target RpT8

4C3T | pdb_00004c3t

The Carbonic anhydrase from Thermovibrio ammonificans reveals an interesting intermolecular disulfide contributing to increasing thermal stability of this enzyme

4COQ | pdb_00004coq

The complex of alpha-Carbonic anhydrase from Thermovibrio ammonificans with inhibitor sulfanilamide.

4UOV | pdb_00004uov

The structure of a tetrameric alpha-carbonic anhydrase from Thermovibrio ammonificans reveals a core formed around intermolecular disulfides, which contribute to its thermostability.

5CM0 | pdb_00005cm0

Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans

5E25 | pdb_00005e25

Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans complexed with alpha-ketoglutarate

5MQZ | pdb_00005mqz

Archaeal branched-chain amino acid aminotransferase from Archaeoglobus fulgidus; holoform

5MR0 | pdb_00005mr0

Thermophilic archaeal branched-chain amino acid transaminases from Geoglobus acetivorans and Archaeoglobus fulgidus: biochemical and structural characterisation

6YAJ | pdb_00006yaj

Split gene transketolase, inactive beta4 tetramer

6YAK | pdb_00006yak

Split gene transketolase, active alpha2beta2 heterotetramer

7B0D | pdb_00007b0d

Sugar transaminase from Archaeoglobus veneficus

7B0M | pdb_00007b0m

Sugar transaminase from a metagenome collected from troll oil field production water

7ODW | pdb_00007odw

Model of Haliangium ochraceum encapsulin from icosahedral single particle reconstruction

7OE2 | pdb_00007oe2

Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

7OEU | pdb_00007oeu

Model of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2JS3 | pdb_00002js3

4C3T | pdb_00004c3t

4COQ | pdb_00004coq

4UOV | pdb_00004uov

5CM0 | pdb_00005cm0

5E25 | pdb_00005e25

5MQZ | pdb_00005mqz

5MR0 | pdb_00005mr0

6YAJ | pdb_00006yaj

6YAK | pdb_00006yak

7B0D | pdb_00007b0d

7B0M | pdb_00007b0m

7ODW | pdb_00007odw

7OE2 | pdb_00007oe2

7OEU | pdb_00007oeu