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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kalverda, A.P."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Homo sapiens (6)
	Pseudomonas aeruginosa (4)
	Mus musculus (3)
	Streptomyces antibioticus (3)
	Escherichia coli K-12 (2)
	synthetic construct (2)
	Hepacivirus hominis (1)
	Paracoccus versutus (1)
	Prochloron didemni (1)
	Staphylococcus aureus (1)

More...

Taxonomy

	Bacteria (12)
	Eukaryota (9)
	other sequences (2)
	Riboviria (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (16)
	SOLUTION NMR (7)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (5)
	2005 - 2009 (5)
	2010 - 2014 (4)
	2015 - 2019 (6)
	2020 - 2024 (2)

Enzyme Classification Name

Lyases (2)

Membrane Protein Annotation

	OPM (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (9)

SCOP Classification

	All beta proteins (13)
	Alpha and beta proteins (a+b) (4)
	Artifacts (4)

AllSelected

1 to 23 of 23 Structures

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1B64 \| pdb_00001b64	Download File View File

SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES

Perez, J.M.J., Siegal, G., Kriek, J., Hard, K., Dijk, J., Canters, G.W., Moller, W.

(1999) Structure 7: 217-226

Released	1999-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ELONGATION FACTOR 1-BETA (protein)

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1ID2 \| pdb_00001id2	Download File View File

CRYSTAL STRUCTURE OF AMICYANIN FROM PARACOCCUS VERSUTUS (THIOBACILLUS VERSUTUS)

Romero, A., Nar, H., Messerschmidt, A.

(1994) J Mol Biology 236: 1196-1211

Released	2001-04-11
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Paracoccus versutus
Macromolecule	AMICYANIN (protein)
Unique Ligands	CU

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1LDS \| pdb_00001lds	Download File View File

Crystal Structure of monomeric human beta-2-microglobulin

Trinh, C.H., Smith, D.P., Kalverda, A.P., Phillips, S.E.V., Radford, S.E.

(2002) Proc Natl Acad Sci U S A 99: 9771-9776

Released	2002-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	beta-2-microglobulin (protein)
Unique Ligands	NA

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1QY0 \| pdb_00001qy0	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	Major urinary protein (protein)
Unique Ligands	CD, GOL, NA

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1QY1 \| pdb_00001qy1	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, NA, PRZ

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1QY2 \| pdb_00001qy2	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, IPZ, NA

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2FT6 \| pdb_00002ft6	Download File View File

Structure of Cu(II)azurin with the metal-binding loop sequence "CTFPGHSALM" replaced with "CTPHPM"

Banfield, M.J.

(2006) Proc Natl Acad Sci U S A 103: 7258-7263

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Azurin (protein)
Unique Ligands	CU

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2FT7 \| pdb_00002ft7	Download File View File

Structure of Cu(I)azurin at pH 6, with the metal-binding loop sequence "CTFPGHSALM" replaced with "CTPHPM"

Banfield, M.J.

(2006) Proc Natl Acad Sci U S A 103: 7258-7263

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Azurin (protein)
Unique Ligands	CU1

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2FT8 \| pdb_00002ft8	Download File View File

Structure of Cu(I)azurin, pH8, with the metal-binding loop sequence "CTFPGHSALM" replaced with "CTPHPM"

Banfield, M.J.

(2006) Proc Natl Acad Sci U S A 103: 7258-7263

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Azurin (protein)
Unique Ligands	CU1

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2FTA \| pdb_00002fta	Download File View File

Structure of Cu(II)azurin with the metal-binding loop sequence "CTFPGHSALM" replaced with "CTPHPFM"

Banfield, M.J.

(2006) Proc Natl Acad Sci U S A 103: 7258-7263

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Azurin (protein)
Unique Ligands	2PE, CU, EOH, PEG

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2K36 \| pdb_00002k36	Download File View File

Structure ensemble Backbone and side-chain 1H, 13C, and 15N Chemical Shift Assignments, 1H-15N RDCs and 1H-1H nOe restraints for protein K7 from the Vaccinia virus

Kalverda, A.P., Thompson, G.S., Vogel, A., Schr der, M., Bowie, A.G., Khan, A.R., Homans, S.W.

(2009) J Mol Biology 385: 843-853

Released	2008-10-28
Method	SOLUTION NMR
Organisms	Vaccinia virus
Macromolecule	Protein K7 (protein)

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2KYA \| pdb_00002kya	Download File View File

Solution structure of the leader sequence of the patellamide precursor peptide, PatE1-34

Houssen, W.E., Wright, S.H., Kalverda, A.P., Thompson, G.S., Kelly, S.M., Jaspars, M.

(2010) Chembiochem 11: 1867-1873

Released	2010-09-01
Method	SOLUTION NMR
Organisms	Prochloron didemni
Macromolecule	Patellamide protein (protein)

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2MZW \| pdb_00002mzw	Download File View File

Staphylococcus aureus FusB:EF-GC3 complex

Tomlinson, J.H., Thompson, G.S., Kalverda, A.P., Zhuravleva, A., O'Neill, A.

(2016) Sci Rep 6: 19524-19524

Released	2016-01-27
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	Elongation factor G (protein) Far1 (protein)
Unique Ligands	ZN

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2XKS \| pdb_00002xks	Download File View File

Prion-like conversion during amyloid formation at atomic resolution

Eichner, T., Kalverda, A.P., Thompson, G.S., Radford, S.E., Homans, S.W.

(2011) Mol Cell 41: 161-172

Released	2011-02-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	BETA-2-MICROGLOBULIN (protein)

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2XKU \| pdb_00002xku	Download File View File

Prion-like conversion during amyloid formation at atomic resolution

Eichner, T., Kalverda, A.P., Thompson, G.S., Homans, S.W., Radford, S.E.

(2011) Mol Cell 41: 161-172

Released	2011-02-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	BETA-2-MICROGLOBULIN (protein)

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3ZD0 \| pdb_00003zd0	Download File View File

The Solution Structure of Monomeric Hepatitis C Virus p7 Yields Potent Inhibitors of Virion Release

Foster, T.L., Sthompson, G., Kalverda, A.P., Kankanala, J., Thompson, J., Barker, A.M., Clarke, D., Noerenberg, M., Pearson, A.R., Rowlands, D.J., Homans, S.W., Harris, M., Foster, R., Griffin, S.D.C.

(2014) Hepatology 59: 408

Released	2013-09-04
Method	SOLUTION NMR
Organisms	Hepacivirus hominis
Macromolecule	P7 PROTEIN (protein)

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4CRZ \| pdb_00004crz	Download File View File

Direct visualisation of strain-induced protein prost-translational modification

Monteiro, D.C.F., Patel, V., Bartlett, C.P., Grant, T.D., Nozaki, S., Gowdy, J.A., Snell, E.H., Niki, H., Pearson, A.R., Webb, M.E.

(2015) Chem Biol 22: 492

Released	2015-03-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	ASPARTATE 1-DECARBOXYLASE (protein) PANZ (protein)
Unique Ligands	ACO, MG, SCN

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4CS0 \| pdb_00004cs0	Download File View File

Direct visualisation of strain-induced protein post-translational modification

Monteiro, D.C.F., Patel, V., Bartlett, C.P., Grant, T.D., Nozaki, S., Gowdy, J.A., Snell, E.H., Niki, H., Pearson, A.R., Webb, M.E.

(2015) Chem Biol 22: 492

Released	2015-03-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	ASPARTATE 1-DECARBOXYLASE (protein) PANZ (protein)
Unique Ligands	ACO, MG, SCN

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6HNL \| pdb_00006hnl	Download File View File

Selenomethionine derivative of IdmH 96-104 loop truncation variant

Drulyte, I., Obajdin, J., Trinh, C., Hemsworth, G.R., Berry, A.

(2019) IUCrJ 6: 1120-1133

Released	2019-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces antibioticus
Macromolecule	Putative polyketide cyclase IdmH (protein)

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6HNM \| pdb_00006hnm	Download File View File

Crystal structure of IdmH 96-104 loop truncation variant

Drulyte, I., Obajdin, J., Trinh, C., Hemsworth, G.R., Berry, A.

(2019) IUCrJ 6: 1120-1133

Released	2019-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces antibioticus
Macromolecule	putative polyketide cyclase IdmH (protein)

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6HNN \| pdb_00006hnn	Download File View File

Crystal structure of wild-type IdmH, a putative polyketide cyclase from Streptomyces antibioticus

Drulyte, I., Obajdin, J., Trinh, C., Hemsworth, G.R., Berry, A.

(2019) IUCrJ 6: 1120-1133

Released	2019-11-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces antibioticus
Macromolecule	Putative polyketide cyclase IdmH (protein)

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6TBT \| pdb_00006tbt	Download File View File

Crystal structure of the BCL6 BTB domain in complex with an Apt48 peptide

Zacharchenko, T., Wright, S.C.

(2021) Structure

Released	2021-10-13
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Apt48 peptide (protein) B-cell lymphoma 6 protein (protein)
Unique Ligands	CL, GOL, MG, NA

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6TCJ \| pdb_00006tcj	Download File View File

Crystal structure of the BCL6 BTB domain in complex with a hybrid BTB-binding (HBP) peptide

Zacharchenko, T., Wright, S.C.

(2021) Structure

Released	2021-10-13
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	B-cell lymphoma 6 protein (protein) Hybrid BTB-binding (HBP) peptide (protein)
Unique Ligands	NA

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B64 | pdb_00001b64

1ID2 | pdb_00001id2

1LDS | pdb_00001lds

1QY0 | pdb_00001qy0

1QY1 | pdb_00001qy1

1QY2 | pdb_00001qy2

2FT6 | pdb_00002ft6

2FT7 | pdb_00002ft7

2FT8 | pdb_00002ft8

2FTA | pdb_00002fta

2K36 | pdb_00002k36

2KYA | pdb_00002kya

2MZW | pdb_00002mzw

2XKS | pdb_00002xks

2XKU | pdb_00002xku

3ZD0 | pdb_00003zd0

4CRZ | pdb_00004crz

4CS0 | pdb_00004cs0

6HNL | pdb_00006hnl

6HNM | pdb_00006hnm

6HNN | pdb_00006hnn

6TBT | pdb_00006tbt

6TCJ | pdb_00006tcj