2KYA | pdb_00002kya

Solution structure of the leader sequence of the patellamide precursor peptide, PatE1-34

• PDB DOI: https://doi.org/10.2210/pdb2KYA/pdb
• BMRB: 16943

• Classification: UNKNOWN FUNCTION
• Organism(s): Prochloron didemni
• Mutation(s): No 


• Deposited: 2010-05-21 Released: 2010-09-01 
• Deposition Author(s): Houssen, W.E., Wright, S.H., Kalverda, A.P., Thompson, G.S., Kelly, S.M., Jaspars, M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 14 
• Conformers Submitted: 14 
• Selection Criteria: structures with the lowest energy 

Literature

Solution Structure of the Leader Sequence of the Patellamide Precursor Peptide, PatE(1-34).

Houssen, W.E., Wright, S.H., Kalverda, A.P., Thompson, G.S., Kelly, S.M., Jaspars, M.

(2010) Chembiochem 11: 1867-1873

• PubMed: 20715266 
• DOI: https://doi.org/10.1002/cbic.201000305
• Primary Citation of Related Structures:  
  2KYA


• PubMed Abstract: 
  

  The solution structure of the leader sequence of the patellamide precursor peptide was analysed by using CD and determined with NOE-restrained molecular dynamics calculations. This leader sequence is highly conserved in the precursor peptides of some other cyanobactins harbouring heterocycles, and is assumed to play a role in targeting the precursor peptide to the post-translational machinery. The sequence was observed to form an alpha-helix spanning residues 13-28 with a hydrophobic surface on one side of the helix. This hydrophobic surface is proposed to be the site of the initial binding with modifying enzymes.

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Organizational Affiliation: 

Marine Biodiscovery Centre, Department of Chemistry, University of Aberdeen, Aberdeen AB24 3UE, Scotland, UK.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 3.71 kDa 
• Atom Count: 259 
• Modelled Residue Count: 34 
• Deposited Residue Count: 34 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Patellamide protein	A	34	Prochloron didemni	Mutation(s): 0
UniProt
Find proteins for Q52QJ3 (Prochloron didemni) Explore Q52QJ3  Go to UniProtKB:  Q52QJ3

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 14 
• Conformers Submitted: 14 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-09-01 
Deposition Author(s): Houssen, W.E., Wright, S.H., Kalverda, A.P., Thompson, G.S., Kelly, S.M., Jaspars, M.

Revision History  

• Version 1.0: 2010-09-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2020-02-05
  Changes: Other
• Version 1.3: 2024-05-01
  Changes: Data collection, Database references