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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lee, D.Y."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (5)
	Fervidobacterium islandicum (3)
	Mus musculus (2)
	Bacteroides fragilis (1)
	Escherichia coli K-12 (1)
	Listeria innocua (1)
	Methanococcus vannielii (1)
	Nostoc sp. PCC 7120 = FACHB-418 (1)
	Plasmodium falciparum 3D7 (1)

Taxonomy

	Bacteria (7)
	Eukaryota (7)
	Archaea (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (10)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (7)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (6)
	2015 - 2019 (3)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	Artifacts (5)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 15 of 15 Structures

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1YZS \| pdb_00001yzs	Download File View File

Solution structure of human sulfiredoxin (srx)

Gruschus, J.M., Lee, D.Y., Ferretti, J.A., Rhee, S.G.

To be published

Released	2005-03-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	sulfiredoxin (protein)

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2JZ7 \| pdb_00002jz7	Download File View File

Solution NMR structure of selenium-binding protein from Methanococcus Vannielii

Suzuki, M., Stadtman, T.C., Tjandra, N.

(2008) J Biological Chem 283: 25936-25943

Released	2008-07-22
Method	SOLUTION NMR
Organisms	Methanococcus vannielii
Macromolecule	Selenium binding protein (protein)

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2KC7 \| pdb_00002kc7	Download File View File

Solution NMR structure of Bacteroides fragilis protein BF1650. Northeast Structural Genomics Consortium target BfR218

Eletsky, A., Wu, Y., Sukumaran, D., Lee, H., Lee, D.Y., Jiang, M., Foote, E.L., Xiao, R., Nair, R., Everett, J.K., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Prestegard, J.H., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-01-13
Method	SOLUTION NMR
Organisms	Bacteroides fragilis
Macromolecule	bfr218_protein (protein)

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2KPP \| pdb_00002kpp	Download File View File

Solution NMR structure of Lin0431 protein from Listeria innocua. Northeast Structural Genomics Consortium Target LkR112

Tang, Y., Xiao, R., Ciccosanti, C., Janjua, H., Lee, D.Y., Everett, J.K., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

(2010) Proteins 78: 2563-2568

Released	2010-02-23
Method	SOLUTION NMR
Organisms	Listeria innocua
Macromolecule	Lin0431 protein (protein)

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2LJW \| pdb_00002ljw	Download File View File

Solution NMR structure of Alr2454 protein from Nostoc sp. strain PCC 7120, Northeast Structural Genomics Consortium Target NsR264

Aramini, J.M., Lee, D., Ciccosanti, C., Janjua, H., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

(2012) J Struct Funct Genomics 13: 171-176

Released	2011-10-19
Method	SOLUTION NMR
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Alr2454 protein (protein)

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3B7B \| pdb_00003b7b	Download File View File

EuHMT1 (Glp) Ankyrin Repeat Domain (Structure 1)

Collins, R.E., Horton, J.R., Cheng, X.

(2008) Nat Struct Mol Biol 15: 245-250

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Homo sapiens
Macromolecule	Euchromatic histone-lysine N-methyltransferase 1 (protein)
Unique Ligands	SO4

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3B95 \| pdb_00003b95	Download File View File

EuHMT1 (Glp) Ankyrin Repeat Domain (Structure 2)

Collins, R.E., Horton, J.R., Cheng, X.

(2008) Nat Struct Mol Biol 15: 245-250

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Homo sapiens
Macromolecule	Euchromatic histone-lysine N-methyltransferase 1 (protein) Histone H3 N-terminal Peptide (protein)
Unique Ligands	SO4

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3QUP \| pdb_00003qup	Download File View File

Inhibitor bound structure of the kinase domain of the murine receptor tyrosine kinase TYRO3 (Sky)

Ohren, J.F.

(2012) Bioorg Med Chem Lett 22: 190-193

Released	2011-12-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Tyrosine-protein kinase receptor TYRO3 (protein)
Unique Ligands	LUN

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3U0O \| pdb_00003u0o	Download File View File

The crystal structure of selenophosphate synthetase from E. coli

Noinaj, N., Wattanasak, R., Wally, J., Stadtman, T., Buchanan, S.K.

(2012) J Bacteriol 194: 499-508

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli K-12
Macromolecule	Selenide, water dikinase (protein)
Unique Ligands	MG

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4E44 \| pdb_00004e44	Download File View File

Crystal structure of the hMHF1/hMHF2 Histone-Fold Tetramer

Fox III, D., Zhao, Y., Yang, W., Weidong, W.

To be published

Released	2013-03-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Centromere protein S (protein) Centromere protein X (protein)

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4E45 \| pdb_00004e45	Download File View File

Crystal structure of the hMHF1/hMHF2 Histone-Fold Tetramer in Complex with Fanconi Anemia Associated Helicase hFANCM

Fox III, D., Zhao, Y., Yang, W., Weidong, W.

To be published

Released	2013-03-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Centromere protein S (protein) Centromere protein X (protein) Fanconi anemia group M protein (protein)
Unique Ligands	GOL, ZN

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6A6E \| pdb_00006a6e	Download File View File

Crystal structure of thermostable Cysteine desulfurase (FiSufS) from thermophilic Fervidobacterium Islandicum AW-1

Dhanasingh, I., Jin, H.S., Lee, D.W., Lee, S.H.

(2020) Microb Biotechnol

Released	2019-10-09
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Fervidobacterium islandicum
Macromolecule	Cysteine desulfurase (protein)
Unique Ligands	CIT, GOL, PEG, PLP

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6A6F \| pdb_00006a6f	Download File View File

Crystal structure of Putative iron-sulfur cluster assembly scaffold protein for SUF system (FiSufU) from thermophilic Fervidobacterium Islandicum AW-1

Dhanasingh, I., Jin, H.S., Lee, D.W., Lee, S.H.

(2020) Microb Biotechnol

Released	2019-10-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Fervidobacterium islandicum
Macromolecule	Iron-sulfur cluster assembly scaffold protein NifU (protein)
Unique Ligands	GOL, NI, PEG, ZN

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6A6G \| pdb_00006a6g	Download File View File

Crystal structure of thermostable FiSufS-SufU complex from thermophilic Fervidobacterium Islandicum AW-1

Dhanasingh, I., Jin, H.S., Lee, D.W., Lee, S.H.

(2020) Microb Biotechnol

Released	2019-10-09
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Fervidobacterium islandicum
Macromolecule	Cysteine desulfurase (protein) Iron-sulfur cluster assembly scaffold protein NifU (protein)
Unique Ligands	GOL, PEG, PLP, ZN

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7TXW \| pdb_00007txw	Download File View File

Crystal structure of the complex of the malaria sexual stage protein and vaccine target Pfs25 with the Fab fragment of a transmission blocking antibody 1G2

Singh, K., Gittis, A.G., Garboczi, D.N.

(2023) NPJ Vaccines 8: 56-56

Released	2023-04-12
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Mus musculus Plasmodium falciparum 3D7
Macromolecule	Fab fragment of monoclonal antibody 1G2 heavy chain (protein) Fab fragment of monoclonal antibody 1G2 light chain (protein) Ookinete surface protein P25 (protein)
Unique Ligands	EDO, EOH, GOL, PEG

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1YZS | pdb_00001yzs

Solution structure of human sulfiredoxin (srx)

2JZ7 | pdb_00002jz7

Solution NMR structure of selenium-binding protein from Methanococcus Vannielii

2KC7 | pdb_00002kc7

Solution NMR structure of Bacteroides fragilis protein BF1650. Northeast Structural Genomics Consortium target BfR218

2KPP | pdb_00002kpp

Solution NMR structure of Lin0431 protein from Listeria innocua. Northeast Structural Genomics Consortium Target LkR112

2LJW | pdb_00002ljw

Solution NMR structure of Alr2454 protein from Nostoc sp. strain PCC 7120, Northeast Structural Genomics Consortium Target NsR264

3B7B | pdb_00003b7b

EuHMT1 (Glp) Ankyrin Repeat Domain (Structure 1)

3B95 | pdb_00003b95

EuHMT1 (Glp) Ankyrin Repeat Domain (Structure 2)

3QUP | pdb_00003qup

Inhibitor bound structure of the kinase domain of the murine receptor tyrosine kinase TYRO3 (Sky)

3U0O | pdb_00003u0o

The crystal structure of selenophosphate synthetase from E. coli

4E44 | pdb_00004e44

Crystal structure of the hMHF1/hMHF2 Histone-Fold Tetramer

4E45 | pdb_00004e45

Crystal structure of the hMHF1/hMHF2 Histone-Fold Tetramer in Complex with Fanconi Anemia Associated Helicase hFANCM

6A6E | pdb_00006a6e

Crystal structure of thermostable Cysteine desulfurase (FiSufS) from thermophilic Fervidobacterium Islandicum AW-1

6A6F | pdb_00006a6f

Crystal structure of Putative iron-sulfur cluster assembly scaffold protein for SUF system (FiSufU) from thermophilic Fervidobacterium Islandicum AW-1

6A6G | pdb_00006a6g

Crystal structure of thermostable FiSufS-SufU complex from thermophilic Fervidobacterium Islandicum AW-1

7TXW | pdb_00007txw

Crystal structure of the complex of the malaria sexual stage protein and vaccine target Pfs25 with the Fab fragment of a transmission blocking antibody 1G2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1YZS | pdb_00001yzs

2JZ7 | pdb_00002jz7

2KC7 | pdb_00002kc7

2KPP | pdb_00002kpp

2LJW | pdb_00002ljw

3B7B | pdb_00003b7b

3B95 | pdb_00003b95

3QUP | pdb_00003qup

3U0O | pdb_00003u0o

4E44 | pdb_00004e44

4E45 | pdb_00004e45

6A6E | pdb_00006a6e

6A6F | pdb_00006a6f

6A6G | pdb_00006a6g

7TXW | pdb_00007txw