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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Stauffer, S.R."

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Search Summary

This query matches 59 Structures.

Refinements

Structure Determination Methodology

experimental (59)

Scientific Name of Source Organism

	Homo sapiens (43)
	Severe acute respiratory syndrome-related coronavirus (6)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Tylonycteris bat coronavirus HKU4 (4)
	Bos taurus (1)

Taxonomy

	Eukaryota (44)
	Riboviria (15)

Experimental Method

X-RAY DIFFRACTION (59)

Polymer Entity Type

Protein (59)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (37)
	2.0 - 2.5 (11)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (8)
	2015 - 2019 (27)
	2020 - 2024 (21)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (1)

Symmetry Type

	Asymmetric (43)
	Cyclic (17)

SCOP Classification

	All beta proteins (37)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (6)
	Artifacts (4)

AllSelected

1 to 25 of 59 Structures

Page 1 of 3

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2NTR \| pdb_00002ntr	Download File View File

Crystal structure of Human Bace-1 bound to inhibitor

Munshi, S.

(2007) Bioorg Med Chem Lett 17: 1117-1121

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	L00

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2OAH \| pdb_00002oah	Download File View File

Crystal Structure of Human Beta Secretase Complexed with inhibitor

Munshi, S.

(2007) Bioorg Med Chem Lett 17: 1788-1792

Released	2007-08-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	QIN

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3FKT \| pdb_00003fkt	Download File View File

Crystal Structure of Human Beta Secretase Complexed with Spiropiperdine Iminohydantoin Inhibitor

Munshi, S.

(2008) J Med Chem 51: 6259-6262

Released	2009-01-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	SII

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3V3M \| pdb_00003v3m	Download File View File

Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) 3CL Protease in Complex with N-[(1R)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-N-(4-tert-butylphenyl)furan-2-carboxamide inhibitor.

Jacobs, J., Grum-Tokars, V., Zhou, Y., Turlington, M., Saldanha, S.A., Chase, P., Eggler, A., Dawson, E.S., Baez-Santos, Y.M., Tomar, S., Mielech, A.M., Baker, S.C., Lindsley, C.W., Hodder, P., Mesecar, A., Stauffer, S.R.

(2013) J Med Chem 56: 534-546

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	0EN, DMS

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4MDS \| pdb_00004mds	Download File View File

Discovery of N-(benzo[1,2,3]triazol-1-yl)-N-(benzyl)acetamido)phenyl) carboxamides as severe acute respiratory syndrome coronavirus (SARS-CoV) 3CLpro inhibitors: identification of ML300 and non-covalent nanomolar inhibitors with an induced-fit binding

Mesecar, A.D., Grum-Tokars, V.

(2013) Bioorg Med Chem Lett 23: 6172-6177

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	23H, DMS

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4OG3 \| pdb_00004og3	Download File View File

Human menin with bound inhibitor MIV-3R

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2S6, DMS, PEG, PG4, SO4

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4OG4 \| pdb_00004og4	Download File View File

Human menin with bound inhibitor MIV-3S

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2VK, DMS, PEG, PG4, PGE, SO4, TBF

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4OG5 \| pdb_00004og5	Download File View File

Human menin with bound inhibitor MIV-5

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2S7, DMS, PEG, PG4, SO4, TBF

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4OG6 \| pdb_00004og6	Download File View File

Human menin with bound inhibitor MIV-4

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2S9, DMS, PEG, PG4, SO4

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4OG7 \| pdb_00004og7	Download File View File

Human menin with bound inhibitor MIV-7

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2SE, DMS, PEG, PGE, SO4

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4OG8 \| pdb_00004og8	Download File View File

Human menin with bound inhibitor MIV-6R

He, S., Senter, T.J., Pollock, J.W., Han, C., Upadhyay, S.K., Purohit, T., Gogliotti, R.D., Lindsley, C.W., Cierpicki, T., Stauffer, S.R., Grembecka, J.

(2014) J Med Chem 57: 1543-1556

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	2SF, DMS, PG4, PGA, SO4, TBF

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4YO9 \| pdb_00004yo9	Download File View File

HKU4 3CLpro unbound structure

St John, S.E., Mesecar, A.

(2015) Bioorg Med Chem 23: 6036-6048

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tylonycteris bat coronavirus HKU4
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ACT, FMT, IPA, MPD, SIN, ZN

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4YOG \| pdb_00004yog	Download File View File

HKU4-3CLpro bound to non-covalent inhibitor 3B

St John, S.E., Mesecar, A.

(2015) Bioorg Med Chem 23: 6036-6048

Released	2015-08-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tylonycteris bat coronavirus HKU4
Macromolecule	3C-like proteinase (protein)
Unique Ligands	4F5, ACT

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4YOI \| pdb_00004yoi	Download File View File

Structure of HKU4 3CLpro bound to non-covalent inhibitor 1A

St John, S.E., Mesecar, A.

(2015) Bioorg Med Chem 23: 6036-6048

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Tylonycteris bat coronavirus HKU4
Macromolecule	3C-like proteinase (protein)
Unique Ligands	4F4, ACT, FMT

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4YOJ \| pdb_00004yoj	Download File View File

HKU4 3CLpro bound to non-covalent inhibitor 2A

St John, S.E., Mesecar, A.

(2015) Bioorg Med Chem 23: 6036-6048

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tylonycteris bat coronavirus HKU4
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ACT, FMT, RFM

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4ZPE \| pdb_00004zpe	Download File View File

BACE1 in complex with 4-(cyclohexylamino)-1-(3-fluorophenyl)-8-(3-isopropoxybenzyl)-1,3,8-triazaspiro[4.5]dec-3-en-2-one

Orth, P.

(2015) Bioorg Med Chem Lett 25: 4812-4819

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	4QA

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4ZPF \| pdb_00004zpf	Download File View File

BACE1 in complex with 8-(3-((1-aminopropan-2-yl)oxy)benzyl)-4-(cyclohexylamino)-1-(3-fluorophenyl)-1,3,8-triazaspiro[4.5]dec-3-en-2-one

Orth, P.

(2015) Bioorg Med Chem Lett 25: 4812-4819

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	4QD

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4ZPG \| pdb_00004zpg	Download File View File

BACE1 in complex with 8-benzyl-4-(cyclohexylamino)-1-(3-fluorophenyl)-7-methyl-1,3,8-triazaspiro[4.5]dec-3-en-2-one

Orth, P.

(2015) Bioorg Med Chem Lett 25: 4812-4819

Released	2015-08-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	4QF

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5J74 \| pdb_00005j74	Download File View File

Fluorogen activating protein AM2.2 in complex with TO1-2p

Stanfield, R.L., Wilson, I.A., Wu, Y.

(2016) J Biomol Screen 21: 74-87

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	scFv AM2.2 (protein)
Unique Ligands	6GN, PO4

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5J75 \| pdb_00005j75	Download File View File

Fluorogen Activating Protein AM2.2 in complex with ML342

Stanfield, R.L., Wilson, I.A., Wu, Y.

(2016) J Biomol Screen 21: 74-87

Released	2016-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	scFv AM2.2 (protein)
Unique Ligands	6GQ, PO4

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6D9X \| pdb_00006d9x	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	FZM, NA

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6DAI \| pdb_00006dai	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, G2V

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6DAK \| pdb_00006dak	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, G1Y

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6DAR \| pdb_00006dar	Download File View File

Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design

Phan, J., Fesik, S.W.

(2018) J Med Chem 61: 5623-5642

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 5 (protein)
Unique Ligands	DMS, G2J, SO4