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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wang, L.K."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Acetivibrio thermocellus ATCC 27405 (14)
	Pseudomonas aeruginosa (3)
	Tequatrovirus T4 (3)
	Saccharomyces cerevisiae (2)
	Escherichia coli (1)
	Homo sapiens (1)

Taxonomy

	Bacteria (18)
	Duplodnaviria (3)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

	Protein (24)
	DNA (3)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (3)
	2005 - 2009 (5)
	2010 - 2014 (14)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (5)
	Ligases (7)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (16)
	Asymmetric (8)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (3)
	All beta proteins (1)

AllSelected

1 to 24 of 24 Structures

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1D8H \| pdb_00001d8h	Download File View File

X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.

Lima, C.D., Wang, L.K., Shuman, S.

(1999) Cell 99: 533-543

Released	1999-11-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	mRNA TRIPHOSPHATASE CET1 (protein)
Unique Ligands	MN, SO4

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1D8I \| pdb_00001d8i	Download File View File

X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH A SULFATE ION.

Lima, C.D., Wang, L.K., Shuman, S.

(1999) Cell 99: 533-543

Released	1999-11-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	MRNA TRIPHOSPHATASE CET1 (protein)
Unique Ligands	SO4

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1JR7 \| pdb_00001jr7	Download File View File

CRYSTAL STRUCTURE OF GAB REVEALS OXIDOREDUCTASE FOLD

Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2002) Protein Sci 11: 723-738

Released	2001-08-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL 37.4 KDA PROTEIN IN ILEY-GABD INTERGENIC REGION (protein)
Unique Ligands	FE2

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1LY1 \| pdb_00001ly1	Download File View File

Structure and Mechanism of T4 Polynucleotide Kinase

Wang, L.K., Lima, C.D., Shuman, S.

(2002) EMBO J 21: 3873-3880

Released	2002-07-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	polynucleotide kinase (protein)
Unique Ligands	SO4

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1S68 \| pdb_00001s68	Download File View File

Structure and Mechanism of RNA Ligase

Ho, C.K., Wang, L.K., Lima, C.D., Shuman, S.

(2004) Structure 12: 327-339

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tequatrovirus T4
Macromolecule	RNA Ligase 2 (protein)
Unique Ligands	AMP

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2FAO \| pdb_00002fao	Download File View File

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain

Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.

(2006) Proc Natl Acad Sci U S A 103: 1711-1716

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	probable ATP-dependent DNA ligase (protein)
Unique Ligands	SO4

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2FAQ \| pdb_00002faq	Download File View File

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with ATP and Manganese

Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.

(2006) Proc Natl Acad Sci U S A 103: 1711-1716

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	probable ATP-dependent DNA ligase (protein)
Unique Ligands	ATP, MN, SO4

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2FAR \| pdb_00002far	Download File View File

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese

Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.

(2006) Proc Natl Acad Sci U S A 103: 1711-1716

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	probable ATP-dependent DNA ligase (protein)
Unique Ligands	DTP, MN, SO4

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2IA5 \| pdb_00002ia5	Download File View File

T4 polynucleotide kinase/phosphatase with bound sulfate and magnesium.

Zhu, H., Smith, P.C., Wang, L.K., Lima, C.D., Shuman, S.

(2007) Virology 366: 126-136

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Tequatrovirus T4
Macromolecule	Polynucleotide kinase (protein)
Unique Ligands	ARS, MG, SO4

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2R2J \| pdb_00002r2j	Download File View File

crystal structure of human ERp44

Wang, L.K., Li, S.J., Sun, F., Wang, C.C.

(2008) EMBO Rep

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Thioredoxin domain-containing protein 4 (protein)
Unique Ligands	FMT, SIN

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3TY5 \| pdb_00003ty5	Download File View File

Crystal Structure of C. thermocellum PNKP Ligase domain in complex with ATP

Smith, P., Wang, L., Shuman, S.

(2012) Proc Natl Acad Sci U S A 109: 2296-2301

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / polynucleotide 5'-hydroxyl-kinase / polynucleotide 3'-phosphatase (protein)
Unique Ligands	ADP, ATP, PGE

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3TY8 \| pdb_00003ty8	Download File View File

Crystal Structure of C. Thermocellum PNKP Ligase Domain Apo Form

Smith, P., Wang, L., Shuman, S.

(2012) Proc Natl Acad Sci U S A 109: 2296-2301

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / polynucleotide 5'-hydroxyl-kinase / polynucleotide 3'-phosphatase (protein)
Unique Ligands	GOL, TAR

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3TY9 \| pdb_00003ty9	Download File View File

Crystal Structure of C. Thermocellum PNKP Ligase Domain AMP-Adenylate

Smith, P., Wang, L., Shuman, S.

(2012) Proc Natl Acad Sci U S A 109: 2296-2301

Released	2012-01-25
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / polynucleotide 5'-hydroxyl-kinase / polynucleotide 3'-phosphatase (protein)
Unique Ligands	AMP, GOL, MG, MPD, MRD

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4GP6 \| pdb_00004gp6	Download File View File

Polynucleotide kinase

Wang, L.K., Das, U., Smith, P., Shuman, S.

(2012) RNA 18: 2277-2286

Released	2012-11-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein)
Unique Ligands	ADP, MG

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4GP7 \| pdb_00004gp7	Download File View File

Polynucleotide kinase

Wang, L.K., Das, U., Smith, P., Shuman, S.

(2012) RNA 18: 2277-2286

Released	2012-11-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein)
Unique Ligands	ATP, CIT, MG, NA

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4J6O \| pdb_00004j6o	Download File View File

Crystal Structure of the Phosphatase Domain of C. thermocellum (Bacterial) PnkP

Wang, L., Smith, P., Shuman, S.

(2013) Nucleic Acids Res 41: 5864-5873

Released	2013-04-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein)
Unique Ligands	CIT, GOL, MN, PG4, PGE

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4JST \| pdb_00004jst	Download File View File

Structure of Clostridium thermocellum polynucleotide kinase bound to UTP

Das, U., Wang, L.K., Smith, P., Shuman, S.

(2013) Biochemistry 52: 4734-4743

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein)
Unique Ligands	MG, NA, UTP

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4JSY \| pdb_00004jsy	Download File View File

Structure of Clostridium thermocellum polynucleotide kinase bound to GTP

Das, U., Wang, L.K., Smith, P., Shuman, S.

(2013) Biochemistry 52: 4734-4743

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein)
Unique Ligands	GTP, MG

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4JT2 \| pdb_00004jt2	Download File View File

Structure of Clostridium thermocellum polynucleotide kinase bound to CTP

Das, U., Wang, L.K., Smith, P., Shuman, S.

(2013) Biochemistry 52: 4734-4743

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein)
Unique Ligands	CTP, MG

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4JT4 \| pdb_00004jt4	Download File View File

Structure of Clostridium thermocellum polynucleotide kinase bound to dATP

Das, U., Wang, L.K., Smith, P., Shuman, S.

(2013) Biochemistry 52: 4734-4743

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein)
Unique Ligands	DTP, MG, NA

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4MDE \| pdb_00004mde	Download File View File

Structure of bacterial polynucleotide kinase product complex bound to GDP and DNA

Shuman, S., Das, U., Wang, L.K., Smith, P., Jacewicz, A.

(2014) Nucleic Acids Res 42: 1152-1161

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein) DNA (5'-D(PCPCPTPGP*T)-3') (nucleic acid)
Unique Ligands	GDP, MG

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4MDF \| pdb_00004mdf	Download File View File

Structure of bacterial polynucleotide kinase Michaelis complex bound to GTP and DNA

Shuman, S., Das, U., Wang, L.K., Smith, P., Jacewicz, A.

(2014) Nucleic Acids Res 42: 1152-1161

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.727 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein) DNA (5'-D(CPCPTPGP*T)-3') (nucleic acid)
Unique Ligands	CIT, GTP, MG

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4QM6 \| pdb_00004qm6	Download File View File

Structure of bacterial polynucleotide kinase bound to GTP and RNA

Das, U., Wang, L.K., Smith, P., Shuman, S.

(2014) J Bacteriol 196: 4285-4292

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein) RNA (nucleic acid)
Unique Ligands	GTP, MG, NA, PO4

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4QM7 \| pdb_00004qm7	Download File View File

Structure of bacterial polynucleotide kinase bound to GTP and pDNA

Das, U., Wang, L.K., Smith, P., Shuman, S.

(2014) J Bacteriol 196: 4285-4292

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Metallophosphoesterase (protein) DNA (nucleic acid)
Unique Ligands	GTP, MG

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1D8H | pdb_00001d8h

1D8I | pdb_00001d8i

1JR7 | pdb_00001jr7

1LY1 | pdb_00001ly1

1S68 | pdb_00001s68

2FAO | pdb_00002fao

2FAQ | pdb_00002faq

2FAR | pdb_00002far

2IA5 | pdb_00002ia5

2R2J | pdb_00002r2j

3TY5 | pdb_00003ty5

3TY8 | pdb_00003ty8

3TY9 | pdb_00003ty9

4GP6 | pdb_00004gp6

4GP7 | pdb_00004gp7

4J6O | pdb_00004j6o

4JST | pdb_00004jst

4JSY | pdb_00004jsy

4JT2 | pdb_00004jt2

4JT4 | pdb_00004jt4

4MDE | pdb_00004mde

4MDF | pdb_00004mdf

4QM6 | pdb_00004qm6

4QM7 | pdb_00004qm7