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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhao, X."

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Search Summary

This query matches 496 Structures.

Refinements

Structure Determination Methodology

experimental (496)

Scientific Name of Source Organism

	Homo sapiens (242)
	Severe acute respiratory syndrome coronavirus 2 (95)
	synthetic construct (23)
	Saccharomyces cerevisiae S288C (18)
	Mus musculus (15)
	Escherichia coli (13)
	African swine fever virus (11)
	Echovirus E11 (10)
	Coxsackievirus B3 (9)
	Bacillus cereus VD045 (8)

More...

Taxonomy

	Eukaryota (344)
	Riboviria (164)
	Bacteria (60)
	other sequences (23)
	Varidnaviria (22)
	Duplodnaviria (12)
	Archaea (6)
	unclassified sequences (6)
	Monodnaviria (4)

Experimental Method

	X-RAY DIFFRACTION (265)
	ELECTRON MICROSCOPY (223)
	SOLUTION NMR (8)

Polymer Entity Type

	Protein (492)
	RNA (30)
	DNA (15)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (57)
	2.0 - 2.5 (119)
	2.5 - 3.0 (148)
	3.0 - 3.5 (99)
	3.5 - 4.0 (34)
	4.0 - 4.5 (8)
	> 4.5 (13)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (22)
	2005 - 2009 (30)
	2010 - 2014 (55)
	2015 - 2019 (55)
	2020 - 2024 (309)
	2025 - 2029 (19)

Enzyme Classification Name

	Hydrolases (138)
	Transferases (65)
	Oxidoreductases (33)
	Ligases (19)
	Isomerases (17)
	Translocases (4)
	Lyases (10)

Membrane Protein Annotation

	PDBTM (32)
	mpstruc (26)
	MemProtMD (25)
	OPM (24)

Symmetry Type

	Asymmetric (333)
	Cyclic (92)
	Icosahedral (50)
	Dihedral (35)
	Octahedral (2)
	Helical (1)

SCOP Classification

	All alpha proteins (60)
	All beta proteins (51)
	Alpha and beta proteins (a/b) (43)
	Artifacts (24)
	Alpha and beta proteins (a+b) (22)
	Coiled coil proteins (1)
	Membrane and cell surface proteins and peptides (6)
	Small proteins (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 496 Structures

Page 1 of 20

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1DKX \| pdb_00001dkx	Download File View File

THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 SELENOMETHIONYL CRYSTALS

Zhu, X., Zhao, X., Burkholder, W.F., Gragerov, A., Ogata, C.M., Gottesman, M.E., Hendrickson, W.A.

(1996) Science 272: 1606-1614

Released	1996-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	SUBSTRATE BINDING DOMAIN OF DNAK (protein) SUBSTRATE PEPTIDE (7 RESIDUES) (protein)

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1DKY \| pdb_00001dky	Download File View File

THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS

Zhu, X., Zhao, X., Burkholder, W.F., Gragerov, A., Ogata, C.M., Gottesman, M.E., Hendrickson, W.A.

(1996) Science 272: 1606-1614

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	DNAK (protein) PEPTIDE SUBSTRATE (protein)

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1DKZ \| pdb_00001dkz	Download File View File

THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS

Zhu, X., Zhao, X., Burkholder, W.F., Gragerov, A., Ogata, C.M., Gottesman, M.E., Hendrickson, W.A.

(1996) Science 272: 1606-1614

Released	1996-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	SUBSTRATE BINDING DOMAIN OF DNAK (protein) SUBSTRATE PEPTIDE (7 RESIDUES) (protein)

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1EMY \| pdb_00001emy	Download File View File

CRYSTAL STRUCTURE OF ASIAN ELEPHANT (ELEPHAS MAXIMUS) CYANO-MET MYOGLOBIN AT 1.78 ANGSTROMS RESOLUTION. PHE 29 (B10) ACCOUNTS FOR ITS UNUSUAL LIGAND BINDING PROPERTIES

Bisig, D.A., Piontek, K.

(1995) J Biological Chem 270: 20754-20762

Released	1995-04-20
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Elephas maximus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	CYN, HEM

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1G2C \| pdb_00001g2c	Download File View File

HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION PROTEIN CORE

Zhao, X., Singh, M., Malashkevich, V.N., Kim, P.S.

(2000) Proc Natl Acad Sci U S A 97: 14172-14177

Released	2001-01-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human respiratory syncytial virus strain RSS-2
Macromolecule	FUSION PROTEIN (F) (protein)

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1K1F \| pdb_00001k1f	Download File View File

Structure of the Bcr-Abl Oncoprotein Oligomerization domain

Zhao, X., Ghaffari, S., Lodish, H., Malashkevich, V.N., Kim, P.S.

(2002) Nat Struct Biol 9: 117-120

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	BREAKPOINT CLUSTER REGION PROTEIN (protein)

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1MCY \| pdb_00001mcy	Download File View File

SPERM WHALE MYOGLOBIN (MUTANT WITH INITIATOR MET AND WITH HIS 64 REPLACED BY GLN, LEU 29 REPLACED BY PHE

Li, T., Phillips Jr., G.N.

(1995) J Biological Chem 270: 20763-20774

Released	1995-12-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (CARBONMONOXY) (protein)
Unique Ligands	CMO, HEM, SO4

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1OBM \| pdb_00001obm	Download File View File

RECOMBINANT SPERM WHALE MYOGLOBIN 29F/64Q/68F/122N MUTANT (MET)

Brucker, E.A., Lile, R.A., Phillips Jr., G.N.

(1998) J Biological Chem 273: 9517-9526

Released	1998-04-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	HEM, SO4

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1OWD \| pdb_00001owd	Download File View File

Substituted 2-Naphthamidine inhibitors of urokinase

Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

(2004) J Med Chem 47: 303-324

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	497

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1OWE \| pdb_00001owe	Download File View File

Substituted 2-Naphthamidine inhibitors of urokinase

Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

(2004) J Med Chem 47: 303-324

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	675, SO4

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1OWH \| pdb_00001owh	Download File View File

Substituted 2-Naphthamidine Inhibitors of Urokinase

Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

(2004) J Med Chem 47: 303-324

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	239, SO4

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1OWI \| pdb_00001owi	Download File View File

Substituted 2-Naphthamidine Inhibitors of Urokinase

Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

(2004) J Med Chem 47: 303-324

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	426

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1OWJ \| pdb_00001owj	Download File View File

Substituted 2-Naphthamidine Inhibitors of Urokinase

Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

(2004) J Med Chem 47: 303-324

Released	2003-09-30
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	155

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1OWK \| pdb_00001owk	Download File View File

Substituted 2-Naphthamidine Inhibitors of Urokinase

Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

(2004) J Med Chem 47: 303-324

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	303

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1Q3H \| pdb_00001q3h	Download File View File

mouse CFTR NBD1 with AMP.PNP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ANP, MG

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1R0W \| pdb_00001r0w	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) apo

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY

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1R0X \| pdb_00001r0x	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ATP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ATP, MG

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1R0Y \| pdb_00001r0y	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ADP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ADP

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1R0Z \| pdb_00001r0z	Download File View File

Phosphorylated Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ATP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ATP, MG

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1R10 \| pdb_00001r10	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ATP, I4122 space group

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ATP, MG

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1SQA \| pdb_00001sqa	Download File View File

Substituted 2-Naphthamidine Inhibitors of Urokinase

Wendt, M.D., Geyer, A., McClellan, W.J., Rockway, T.W., Weitzberg, M., Zhao, X., Stewart, K., Nienaber, V., Klinghofer, V., Giranda, V.L.

(2004) Bioorg Med Chem Lett 14: 3063-3068

Released	2004-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	SO4, UI1

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1SQO \| pdb_00001sqo	Download File View File

Substituted 2-Naphthamidine Inhibitors of Urokinase

Wendt, M.D., Geyer, A., McClellan, W.J., Rockway, T.W., Weitzberg, M., Zhao, X., Mantei, R., Stewart, K., Nienaber, V., Klinghofer, V., Giranda, V.L.

(2004) Bioorg Med Chem Lett 14: 3063-3068

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	SO4, UI2