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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = TRT

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Euglena gracilis (5)
	Hepatitis B virus ayw/France/Tiollais/1979 (5)
	Homo sapiens (3)
	Plasmodium falciparum 3D7 (3)
	Phlebotomus duboscqi (2)
	Saccharomyces cerevisiae S288C (2)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Ixodes ricinus (1)
	Oryctolagus cuniculus (1)

More...

Taxonomy

	Eukaryota (19)
	Riboviria (5)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (10)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (7)
	2.5 - 3.0 (7)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (2)
	2015 - 2019 (12)
	2020 - 2024 (8)

Enzyme Classification Name

	Oxidoreductases (5)
	Hydrolases (3)
	Lyases (2)

Membrane Protein Annotation

	OPM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (17)
	Cyclic (8)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	All alpha proteins (2)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 25 Structures

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1OIZ \| pdb_00001oiz	Download File View File

The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

Meier, R., Tomizaki, T., Schulze-Briese, C., Baumann, U., Stocker, A.

(2003) J Mol Biology 331: 725

Released	2004-01-14
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-TOCOPHEROL TRANSFER PROTEIN (protein)
Unique Ligands	TRT

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2I0U \| pdb_00002i0u	Download File View File

Crystal structures of phospholipases A2 from Vipera nikolskii venom revealing Triton X-100 bound in hydrophobic channel

Gao, W., Bi, R.C.

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vipera nikolskii
Macromolecule	Basic subunit of heterodimer phospholipase A2 (protein)
Unique Ligands	CA, SO4, TFA, TRT

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3IIQ \| pdb_00003iiq	Download File View File

Crystallographic analysis of bacterial signal peptidase in ternary complex with Arylomycin A2 and a beta-sultam inhibitor

Paetzel, M.

(2009) Biochemistry 48: 8976

Released	2009-09-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12 Streptomyces sp.
Macromolecule	ARYLOMYCIN A2 (protein) SIGNAL PEPTIDASE I (protein)
Unique Ligands	CCN, GOL, JZA, M12, TRT

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4G6G \| pdb_00004g6g	Download File View File

Crystal structure of NDH with TRT

Li, W., Feng, Y., Ge, J., Yang, M.

(2012) Nature 491: 478-482

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial (protein)
Unique Ligands	FAD, MG, TRT

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4G74 \| pdb_00004g74	Download File View File

Crystal structure of NDH with Quinone

Li, W., Feng, Y., Ge, J., Yang, M.

(2012) Nature 491: 478-482

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial (protein)
Unique Ligands	FAD, MG, TRT, UQ5

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5JWA \| pdb_00005jwa	Download File View File

the structure of malaria PfNDH2

Yu, Y., Yang, Y.Q., Li, X.L., Yu, J., Ge, J.P., Li, J., Rao, Y., Yang, M.J.

(2017) J Med Chem 60: 1994-2005

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.162 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	NADH dehydrogenase, putative (protein)
Unique Ligands	ACT, FAD, MG, TRT

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5JWB \| pdb_00005jwb	Download File View File

Structure of NDH2 from plasmodium falciparum in complex with NADH

Yu, Y., Li, X.L.

(2017) J Med Chem 60: 1994-2005

Released	2017-03-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Type II NADH:ubiquinone oxidoreductase (protein)
Unique Ligands	ACT, CXS, FAD, MG, NAD, TRT

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5JWC \| pdb_00005jwc	Download File View File

Structure of NDH2 from plasmodium falciparum in complex with RYL-552

Yu, Y.

(2017) J Med Chem 60: 1994-2005

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.051 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	NADH dehydrogenase, putative (protein)
Unique Ligands	4W0, FAD, MG, TRT

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5MIF \| pdb_00005mif	Download File View File

Crystal structure of carboxyl esterase 2 (TmelEST2) from mycorrhizal fungus Tuber melanosporum

Zanotti, G., Vallese, F., Cavazzini, D., Ottonello, S.

(2017) Sci Rep 7: 7628-7628

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.141 Å
Organisms	Tuber melanosporum Mel28
Macromolecule	'Carboxyl esterase 2 (protein)
Unique Ligands	TRT

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6DXZ \| pdb_00006dxz	Download File View File

Rabbit N-acylethanolamine-hydrolyzing acid amidase (NAAA) in complex with non-covalent benzothiazole-piperazine inhibitor ARN19702, in presence of Triton X-100

Gorelik, A., Gebai, A., Illes, K., Piomelli, D., Nagar, B.

(2018) Proc Natl Acad Sci U S A 115: E10032-E10040

Released	2018-09-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	N-acylethanolamine acid amidase alpha-subunit (protein) N-acylethanolamine acid amidase beta-subunit (protein)
Unique Ligands	27L, K, NAG, TON, TRT, WTF

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6MT7 \| pdb_00006mt7	Download File View File

Phlebotomus duboscqi salivary D7 protein, selenomethionine derivative

Andersen, J.F., Jablonka, W.

(2019) Sci Rep 9: 5340-5340

Released	2019-04-10
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Phlebotomus duboscqi
Macromolecule	26.7 kDa salivary protein (protein)
Unique Ligands	TRT

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6MTF \| pdb_00006mtf	Download File View File

D7 protein from Phlebotomus duboscqi, native

Andersen, J.F., Jablonka, W.

(2019) Sci Rep 9: 5340-5340

Released	2019-04-10
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Phlebotomus duboscqi
Macromolecule	26.7 kDa salivary protein (protein)
Unique Ligands	TRT

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6TDU \| pdb_00006tdu	Download File View File

Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, full dimer, rotational states 1

Muhleip, A., Amunts, A.

(2019) Elife 8:

Released	2019-11-27
Method	ELECTRON MICROSCOPY 4.32 Å
Organisms	Euglena gracilis
Macromolecule	Unique protein chains: 29
Unique Ligands	ADP, ATP, CDL, LMT, LPP, MG, TRT

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6TDV \| pdb_00006tdv	Download File View File

Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, membrane region

Muhleip, A., Amunts, A.

(2019) Elife 8:

Released	2019-11-27
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Euglena gracilis
Macromolecule	Unique protein chains: 19
Unique Ligands	CDL, LMT, LPP, TRT

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6TDY \| pdb_00006tdy	Download File View File

Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, OSCP/F1/c-ring in rotational state 1

Muhleip, A., Amunts, A.

(2019) Elife 8:

Released	2019-11-27
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Euglena gracilis
Macromolecule	Unique protein chains: 11
Unique Ligands	ADP, ATP, MG, TRT

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6TDZ \| pdb_00006tdz	Download File View File

Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, OSCP/F1/c-ring, rotational state 2

Muhleip, A., Amunts, A.

(2019) Elife 8:

Released	2019-11-27
Method	ELECTRON MICROSCOPY 3.14 Å
Organisms	Euglena gracilis
Macromolecule	Unique protein chains: 11
Unique Ligands	ADP, ATP, MG, TRT

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6TE0 \| pdb_00006te0	Download File View File

Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, OSCP/F1/c-ring, rotational state 3

Muhleip, A., Amunts, A.

(2019) Elife 8:

Released	2019-11-27
Method	ELECTRON MICROSCOPY 3.92 Å
Organisms	Euglena gracilis
Macromolecule	Unique protein chains: 8
Unique Ligands	ADP, ATP, MG, TRT

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6ZTK \| pdb_00006ztk	Download File View File

Crystal structure of Mialostatin, a gut cystatin from the hard tick Ixodes ricinus

Busa, M., Rezacova, P., Mares, M.

(2021) Int J Mol Sci 22:

Released	2021-06-02
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Ixodes ricinus
Macromolecule	Mialostatin (protein)
Unique Ligands	SO4, TRT

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7PZI \| pdb_00007pzi	Download File View File

HBc-F97L (premature secretion phenotype) in complex with Triton X-100

Makbul, C., Boettcher, B.

(2021) Viruses 13:

Released	2021-12-08
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Hepatitis B virus ayw/France/Tiollais/1979
Macromolecule	Capsid protein (protein)
Unique Ligands	TRT

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7PZK \| pdb_00007pzk	Download File View File

HBc-WT in complex with Triton X-100

Makbul, C., Boettcher, B.

(2021) Viruses 13:

Released	2021-12-08
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Hepatitis B virus ayw/France/Tiollais/1979
Macromolecule	Capsid protein (protein)
Unique Ligands	TRT

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7PZL \| pdb_00007pzl	Download File View File

HBc-F97L premature secretion phenotype

Makbul, C., Boettcher, B.

(2021) Viruses 13:

Released	2021-12-08
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Hepatitis B virus ayw/France/Tiollais/1979
Macromolecule	Capsid protein (protein)
Unique Ligands	TRT

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7PZM \| pdb_00007pzm	Download File View File

HBc-P5T in complex with X-100

Makbul, C., Boettcher, B.

(2021) Viruses 13:

Released	2021-12-08
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Hepatitis B virus ayw/France/Tiollais/1979
Macromolecule	Capsid protein (protein)
Unique Ligands	TRT

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7PZN \| pdb_00007pzn	Download File View File

wt HBc capsid like particles in complex with inhibitory peptide SLLGRM and Triton X-100

Makbul, C., Boettcher, B.

(2021) Viruses 13:

Released	2021-12-08
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli Hepatitis B virus ayw/France/Tiollais/1979
Macromolecule	Capsid protein (protein) SLLGRM, modelled as poly-A,SLLGRM, modelled as poly-A (protein)
Unique Ligands	TRT