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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Scientific Name of the Source Organism = "Aquifex aeolicus VF5"

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Search Summary

This query matches 363 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (363)

Scientific Name of Source Organism

	Aquifex aeolicus VF5 (363)
	Homo sapiens (5)
	Lambdavirus lambda (5)
	synthetic construct (4)
	Pseudomonas aeruginosa PAO1 (3)
	Tequatrovirus T4 (1)

Taxonomy

	Bacteria (363)
	Duplodnaviria (6)
	Eukaryota (5)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (318)
	ELECTRON MICROSCOPY (41)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (361)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (18)
	1.5 - 2.0 (90)
	2.0 - 2.5 (105)
	2.5 - 3.0 (53)
	3.0 - 3.5 (55)
	3.5 - 4.0 (26)
	4.0 - 4.5 (8)
	> 4.5 (4)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (67)
	2010 - 2014 (67)
	2015 - 2019 (104)
	2020 - 2024 (107)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (91)
	Translocases (63)
	Hydrolases (41)
	Oxidoreductases (27)
	Lyases (7)
	Isomerases (2)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (70)
	MemProtMD (53)
	mpstruc (47)
	OPM (39)

Symmetry Type

	Asymmetric (237)
	Cyclic (125)
	Dihedral (22)
	Tetrahedral (5)
	Icosahedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (51)
	Membrane and cell surface proteins and peptides (29)
	Artifacts (15)
	Alpha and beta proteins (a+b) (20)
	All alpha proteins (9)
	All beta proteins (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 363 Polymer Entities

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1GYZ: Entity 1	Download File View File

Bacterial ribosomal protein L20 from Aquifex aeolicus

Raibaud, S., Lebars, I., Bontems, F., Dardel, F.

(2002) J Mol Biology 323: 143

Released	2002-05-10
Method	SOLUTION NMR
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	50S RIBOSOMAL PROTEIN L20

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1ORJ: Entity 1	Download File View File

FLAGELLAR EXPORT CHAPERONE

Evdokimov, A.G., Phan, J., Tropea, J.E., Routzahn, K.M., Peters III, H.K., Pokross, M., Waugh, D.S.

(2003) Nat Struct Biol 10: 789-793

Released	2003-09-16
Method	X-RAY DIFFRACTION 2.25 Å
Chain IDs	A, B, C, D
Organism	Aquifex aeolicus VF5
Macromolecule	flagellar protein FliS

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1ORY: Entity 1	Download File View File

FLAGELLAR EXPORT CHAPERONE IN COMPLEX WITH ITS COGNATE BINDING PARTNER

Evdokimov, A.G., Phan, J., Tropea, J.E., Routzahn, K.M., Peters III, H.K., Pokross, M., Waugh, D.S.

(2003) Nat Struct Biol 10: 789-793

Released	2003-09-16
Method	X-RAY DIFFRACTION 2.45 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	flagellar protein FliS

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1R4V: Entity 1	Download File View File

1.9A crystal structure of protein AQ328 from Aquifex aeolicus

Qiu, Y., Tereshko, V., Kim, Y., Zhang, R., Collart, F., Joachimiak, A., Kossiakoff, A., Midwest Center for Structural Genomics (MCSG)

(2006) Proteins 62: 8-16

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Hypothetical protein AQ_328

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1T6C: Entity 1	Download File View File

Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member

Kristensen, O., Laurberg, M., Liljas, A., Kastrup, J.S., Gajhede, M.

(2004) Biochemistry 43: 8894-8900

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.53 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	exopolyphosphatase

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1T6D: Entity 1	Download File View File

MIRAS phasing of the Aquifex aeolicus Ppx/GppA phosphatase: crystal structure of the type II variant

Kristensen, O., Laurberg, M., Liljas, A., Kastrup, J.S., Gajhede, M.

(2004) Biochemistry 43: 8894-8900

Released	2004-08-03
Method	X-RAY DIFFRACTION 2.15 Å
Chain IDs	A, B
Organism	Aquifex aeolicus VF5
Macromolecule	exopolyphosphatase

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1T6T: Entity 1	Download File View File

putative protein from Aquifex aeolicus

Cuff, M.E., Zhou, M., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A [auth 1], B [auth 2]
Organism	Aquifex aeolicus VF5
Macromolecule	putative protein

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1ULZ: Entity 1	Download File View File

Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase

Kondo, S., Nakajima, Y., Sugio, S., Yong-Biao, J., Sueda, S., Kondo, H.

(2004) Acta Crystallogr D Biol Crystallogr 60: 486-492

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	pyruvate carboxylase n-terminal domain

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1XM7: Entity 1	Download File View File

The Crystal Structure of the Protein of Unknown Function AQ665 from Aquifex aeolicus

Zhang, R., Zhou, M., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B
Organism	Aquifex aeolicus VF5
Macromolecule	hypothetical protein aq_1665

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1YVU: Entity 1	Download File View File

Crystal structure of A. aeolicus Argonaute

Yuan, Y.R., Pei, Y., Ma, J.B., Kuryavyi, V., Zhadina, M., Meister, G., Chen, H.Y., Dauter, Z., Tuschl, T., Patel, D.J.

(2005) Mol Cell 19: 405-419

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.9 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	hypothetical protein aq_1447

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1ZIT: Entity 1	Download File View File

Structure of the receiver domain of NtrC4 from Aquifex aeolicus

Matsubara, K., Pelton, J.G., Wemmer, D.E.

To be published

Released	2006-05-09
Method	SOLUTION NMR
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	transcriptional regulator (NtrC family)

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2A65: Entity 1	Download File View File

Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters

Yamashita, A., Singh, S.K., Kawate, T., Jin, Y., Gouaux, E.

(2005) Nature 437: 215-223

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.65 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Na(+):neurotransmitter symporter (Snf family)

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2DBO: Entity 1	Download File View File

Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus

Ishii, T., Shibata, R., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-15
Method	X-RAY DIFFRACTION 2.76 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	D-tyrosyl-tRNA(Tyr) deacylase

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2DQ3: Entity 1	Download File View File

Crystal structure of aq_298

Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-06-05
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A, B
Organism	Aquifex aeolicus VF5
Macromolecule	Seryl-tRNA synthetase

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2E8B: Entity 1	Download File View File

Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5

Kumarevel, T.S., Malathy sony, S.M., Ponnuswamy, M.N., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.61 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Probable molybdopterin-guanine dinucleotide biosynthesis protein A

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2E8C: Entity 1	Download File View File

Crystal structure of a hypothetical protein (Aq_1549) from Aquifex aeolicus VF5

Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Hypothetical protein Aq_1549

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2E8E: Entity 1	Download File View File

Crystal Structure of a hypothetical protein (Aq_1549) from Aquifex aeolicus VF5 (Reduced form)

Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Hypothetical protein Aq_1549

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2E8F: Entity 1	Download File View File

Crystal Structure of a hypothetical protein (Aq_1549) from Aquifex aeolicus VF5 (Oxidised form)

Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Hypothetical protein Aq_1549

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2EBD: Entity 1	Download File View File

Crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase III from Aquifex aeolicus VF5

Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Aquifex aeolicus VF5
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 3

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2EGT: Entity 1	Download File View File

Crystal Structure of Hypothetical protein (AQ1549) from Aquifex aeolicus

Niwa, H., Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Hypothetical protein AQ_1549

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2EH3: Entity 1	Download File View File

Crystal structure of aq_1058, a transcriptional regulator (TerR/AcrR family) from Aquifex aeolicus VF5

Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.55 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Transcriptional regulator

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2EH6: Entity 1	Download File View File

Crystal structure of acetylornithine aminotransferase from Aquifex aeolicus VF5

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B
Organism	Aquifex aeolicus VF5
Macromolecule	Acetylornithine aminotransferase

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2EHS: Entity 1	Download File View File

Crystal structure of acyl carrier protein from Aquifex aeolicus (form 1)

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.3 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Acyl carrier protein

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2EHT: Entity 1	Download File View File

Crystal structure of acyl carrier protein from Aquifex aeolicus (form 2)

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Aquifex aeolicus VF5
Macromolecule	Acyl carrier protein

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2EKC: Entity 1	Download File View File

Structural study of Project ID aq_1548 from Aquifex aeolicus VF5

Asada, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-25
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Aquifex aeolicus VF5
Macromolecule	Tryptophan synthase alpha chain

1 to 25 of 363 Polymer Entities

Page 1 of 15

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification