2E8B | pdb_00002e8b

Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5

• PDB DOI: https://doi.org/10.2210/pdb2E8B/pdb

• Classification: BIOSYNTHETIC PROTEIN
• Organism(s): Aquifex aeolicus VF5
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-01-19 Released: 2008-01-22 
• Deposition Author(s): Kumarevel, T.S., Malathy sony, S.M., Ponnuswamy, M.N., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.61 Å
• R-Value Free: 
  0.261 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.239 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.239 (Depositor) 

Literature

Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5

Kumarevel, T.S., Malathy Sony, S.M., Ponnuswamy, M.N., Kuramitsu, S., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 23.39 kDa 
• Atom Count: 1,685 
• Modelled Residue Count: 185 
• Deposited Residue Count: 201 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable molybdopterin-guanine dinucleotide biosynthesis protein A	A	201	Aquifex aeolicus VF5	Mutation(s): 0  Gene Names: mobA EC: 2.7.7.77
UniProt
Find proteins for O67413 (Aquifex aeolicus (strain VF5)) Explore O67413  Go to UniProtKB:  O67413

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.61 Å
• R-Value Free:  0.261 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.239 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.239 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.106	α = 90
b = 56.795	β = 90
c = 62.716	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-01-22 
Deposition Author(s): Kumarevel, T.S., Malathy sony, S.M., Ponnuswamy, M.N., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2008-01-22
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2024-03-13
  Changes: Data collection, Database references