RCSB PDB: Search

2L7U \| pdb_00002l7u	Download File View File

Structure of CEL-PEP-RAGE V domain complex

Xue, J., Rai, V., Schmidt, A., Frolov, S., Reverdatto, S., Singer, D., Chabierski, S., Xie, J., Burz, D., Shekhtman, A., Hoffman, R.

(2011) Structure 19: 722-732

Released	2011-05-18
Method	SOLUTION NMR
Organisms	Bos taurus Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) Serum albumin peptide (protein)

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2LE9 \| pdb_00002le9	Download File View File

RAGEC2-S100A13 tetrameric complex

Rani, S.G., Mohan, S.K., Yu, C.

To be published

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) Protein S100-A13 (protein)

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2LMB \| pdb_00002lmb	Download File View File

Solution Structure of C-terminal RAGE (ctRAGE)

Rai, V., Maldonado, A.Y., Burz, D.S., Reverdatto, S., Schmidt, A., Shekhtman, A.

(2012) J Biological Chem 287: 5133-5144

Released	2011-12-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)

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2M1K \| pdb_00002m1k	Download File View File

Interaction of Human S100A6 (C3S) with V domain of Receptor for Advanced Glycation End products (RAGE)

Gupta, A.A., Yu, C.

(2013) Biochem Biophys Res Commun 434: 328-333

Released	2015-03-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) Protein S100-A6 (protein)

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2MJW \| pdb_00002mjw	Download File View File

Structural Insights into Calcium Bound S100P - V Domain of the receptor for advanced glycation end products (RAGE) Complex

Rao, P.S.

(2014) PLoS One 9: e103947-e103947

Released	2014-11-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) Protein S100-P (protein)

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2MOV \| pdb_00002mov	Download File View File

Receptor for Advanced Glycation End Products (RAGE) Specifically Recognizes Methylglyoxal Derived AGEs.

Shekhtman, A., Xue, J., Ray, R., Singer, D., Bohme, D., Burz, D.S., Rai, V., Hoffman, R.

(2014) Biochemistry 53: 3327-3335

Released	2014-06-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	IOR

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3CJJ \| pdb_00003cjj	Download File View File

Crystal structure of human rage ligand-binding domain

Koch, M., Dattilo, B.M., Schiefner, A., Diez, J., Chazin, W.J., Fritz, G.

(2010) Structure 18: 1342-1352

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, ZN

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3O3U \| pdb_00003o3u	Download File View File

Crystal Structure of Human Receptor for Advanced Glycation Endproducts (RAGE)

Park, H., Boyington, J.C.

(2010) J Biological Chem 285: 40762-40770

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.497 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Maltose-binding periplasmic protein, Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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4IM8 \| pdb_00004im8	Download File View File

low resolution crystal structure of mouse RAGE

Xu, D., Young, J.H., Krahn, J.M., Song, D., Corbett, K.D., Chazin, W.J., Pedersen, L.C., Esko, J.D.

(2013) ACS Chem Biol 8: 1611-1620

Released	2013-08-14
Method	X-RAY DIFFRACTION 3.503 Å
Organisms	Mus musculus
Macromolecule	Advanced glycation end-products receptor (protein)

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4LP4 \| pdb_00004lp4	Download File View File

Crystal structure of the human RAGE VC1 fragment in space group P62

Yatime, L., Andersen, G.R.

(2013) FEBS J 280: 6556-6568

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	NA

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4LP5 \| pdb_00004lp5	Download File View File

Crystal structure of the full-length human RAGE extracellular domain (VC1C2 fragment)

Yatime, L., Andersen, G.R.

(2013) FEBS J 280: 6556-6568

Released	2013-10-16
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)

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4OF5 \| pdb_00004of5	Download File View File

Refinement of RAGE-DNA complex in 3S59 without DNA

Yatime, L., Andersen, G.R.

(2014) J Exp Medicine 211: 749-750

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)

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4OFV \| pdb_00004ofv	Download File View File

Refinement of RAGE-DNA complex in 3S58 without DNA

Yatime, L., Andersen, G.R.

(2014) J Exp Medicine 211: 749-750

Released	2014-04-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)

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4OI7 \| pdb_00004oi7	Download File View File

RAGE recognizes nucleic acids and promotes inflammatory responses to DNA

Jin, T., Jiang, J., Xiao, T.

(2013) J Exp Medicine 210: 2447-2463

Released	2014-04-30
Method	X-RAY DIFFRACTION 3.104 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) 5'-D(CPAPCPGPTPTPCPGPTPAPGPCPAPTPCPGPTPTPGPCPAPG)-3' (nucleic acid) 5'-D(CPTPGPCPAPAPCPGPAPTPGPCPTPAPCPGPAPAPCPGPTPG)-3' (nucleic acid)
Unique Ligands	EDO

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4OI8 \| pdb_00004oi8	Download File View File

RAGE is a nucleic acid receptor that promotes inflammatory responses to DNA.

Jin, T., Jiang, J., Xiao, T.

(2013) J Exp Medicine 210: 2447-2463

Released	2014-04-30
Method	X-RAY DIFFRACTION 3.101 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) 5'-D(CPCPAPTPGPAPCPTPGPTPAPGPGPAPAPAPCPTPCPTPAPGPA)-3' (nucleic acid) 5'-D(CPTPCPTPAPGPAPGPTPTPTPCPCPTPAPCPAPGPTPCPAPTPG)-3' (nucleic acid)

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4P2Y \| pdb_00004p2y	Download File View File

Crystal structure of the human RAGE ectodomain (fragment VC1C2) in complex with mouse S100A6

Yatime, L., Andersen, G.R.

(2016) Structure

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Advanced glycosylation end product-specific receptor (protein) Protein S100-A6 (protein)
Unique Ligands	ACT, CA, CL, ZN

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4YBH \| pdb_00004ybh	Download File View File

Crystal structure of the human RAGE ectodomain (VC1C2 fragment) in complex with human S100A6

Yatime, L., Andersen, G.R.

(2016) Structure 24: 2043-2052

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) Protein S100-A6 (protein)
Unique Ligands	ACT, CA, CL, ZN

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6VXG \| pdb_00006vxg	Download File View File

Structure of the C-terminal Domain of RAGE and Its Inhibitor

Ramirez, L., Shekhtman, A.

(2021) Sci Transl Med 13: eabf7084-eabf7084

Released	2021-02-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	RQV

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6XQ1 \| pdb_00006xq1	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V74

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6XQ3 \| pdb_00006xq3	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6Y

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6XQ5 \| pdb_00006xq5	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 1

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6M

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6XQ6 \| pdb_00006xq6	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 11

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6P

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6XQ7 \| pdb_00006xq7	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 5

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6V

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6XQ8 \| pdb_00006xq8	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 11

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, CL, V6M, V6P

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6XQ9 \| pdb_00006xq9	Download File View File

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 13

Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.

(2021) Proteins 89: 1399-1412

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	ACT, V6M, V6S

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

2L7U | pdb_00002l7u

2LE9 | pdb_00002le9

2LMB | pdb_00002lmb

2M1K | pdb_00002m1k

2MJW | pdb_00002mjw

2MOV | pdb_00002mov

3CJJ | pdb_00003cjj

3O3U | pdb_00003o3u

4IM8 | pdb_00004im8

4LP4 | pdb_00004lp4

4LP5 | pdb_00004lp5

4OF5 | pdb_00004of5

4OFV | pdb_00004ofv

4OI7 | pdb_00004oi7

4OI8 | pdb_00004oi8

4P2Y | pdb_00004p2y

4YBH | pdb_00004ybh

6VXG | pdb_00006vxg

6XQ1 | pdb_00006xq1

6XQ3 | pdb_00006xq3

6XQ5 | pdb_00006xq5

6XQ6 | pdb_00006xq6

6XQ7 | pdb_00006xq7

6XQ8 | pdb_00006xq8

6XQ9 | pdb_00006xq9