RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "PRKM8"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 527 Structures.

Refinements

Structure Determination Methodology

experimental (527)

Scientific Name of Source Organism

	Homo sapiens (69)
	Burkholderia pseudomallei 1710b (47)
	Metuloidea murashkinskyi (29)
	Amphitrite ornata (19)
	Escherichia coli K-12 (17)
	Physeter macrocephalus (13)
	Streptomyces griseoflavus (13)
	Bacillus subtilis (12)
	Bacillus sp. TB-90 (11)
	Aspergillus flavus (9)

More...

Taxonomy

	Eukaryota (281)
	Bacteria (244)
	Archaea (2)
	other sequences (2)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (516)
	ELECTRON MICROSCOPY (10)
	NEUTRON DIFFRACTION (2)

Polymer Entity Type

Protein (527)

Refinement Resolution (Å)

	0.5 - 1.0 (11)
	1.0 - 1.5 (80)
	1.5 - 2.0 (234)
	2.0 - 2.5 (133)
	2.5 - 3.0 (53)
	3.0 - 3.5 (14)
	3.5 - 4.0 (2)

Release Date

	1980 - 1984 (2)
	1990 - 1994 (9)
	1995 - 1999 (11)
	2000 - 2004 (31)
	2005 - 2009 (81)
	2010 - 2014 (101)
	2015 - 2019 (158)
	2020 - 2024 (126)
	2025 - 2029 (8)

Enzyme Classification Name

	Oxidoreductases (312)
	Lyases (23)
	Translocases (6)
	Transferases (14)
	Hydrolases (9)
	Isomerases (3)

Membrane Protein Annotation

	MemProtMD (8)
	PDBTM (8)
	mpstruc (5)
	OPM (8)

Symmetry Type

	Asymmetric (240)
	Cyclic (237)
	Dihedral (61)
	Octahedral (11)

SCOP Classification

	All alpha proteins (204)
	All beta proteins (52)
	Alpha and beta proteins (a+b) (53)
	Membrane and cell surface proteins and peptides (2)
	Alpha and beta proteins (a/b) (14)
	Artifacts (8)
	Multi-domain proteins (alpha and beta) (6)
	Small proteins (2)

AllSelected

1 to 25 of 527 Structures

Page 1 of 22

Sort by

Explore in 3D

1A4F \| pdb_00001a4f	Download File View File

BAR-HEADED GOOSE HEMOGLOBIN (OXY FORM)

Zhang, J., Gu, X.

(1996) J Mol Biology 255: 484-493

Released	1998-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Anser indicus
Macromolecule	HEMOGLOBIN (ALPHA CHAIN) (protein) HEMOGLOBIN (BETA CHAIN) (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1A6M \| pdb_00001a6m	Download File View File

OXY-MYOGLOBIN, ATOMIC RESOLUTION

Vojtechovsky, J., Chu, K., Berendzen, J., Sweet, R.M., Schlichting, I.

(1999) Biophys J 77: 2153-2174

Released	1999-04-06
Method	X-RAY DIFFRACTION 1 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	HEM, OXY, SO4

Explore in 3D

1ASH \| pdb_00001ash	Download File View File

THE STRUCTURE OF ASCARIS HEMOGLOBIN DOMAIN I AT 2.2 ANGSTROMS RESOLUTION: MOLECULAR FEATURES OF OXYGEN AVIDITY

Yang, J., Mathews, F.S., Kloek, A.P., Goldberg, D.E.

(1995) Proc Natl Acad Sci U S A 92: 4224-4228

Released	1995-02-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Ascaris suum
Macromolecule	HEMOGLOBIN (OXY) (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1B86 \| pdb_00001b86	Download File View File

HUMAN DEOXYHAEMOGLOBIN-2,3-DIPHOSPHOGLYCERATE COMPLEX

Richard, V., Dodson, G.G., Mauguen, Y.

(1993) J Mol Biology 233: 270-274

Released	1999-02-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (HEMOGLOBIN; ALPHA CHAIN) (protein) PROTEIN (HEMOGLOBIN; BETA CHAIN) (protein)
Unique Ligands	DG2, HEM, OXY

Explore in 3D

1DCC \| pdb_00001dcc	Download File View File

2.2 ANGSTROM STRUCTURE OF OXYPEROXIDASE: A MODEL FOR THE ENZYME:PEROXIDE COMPLEX

Miller, M.A., Shaw, A., Kraut, J.

(1994) Nat Struct Biol 1: 524-531

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1DP6 \| pdb_00001dp6	Download File View File

OXYGEN-BINDING COMPLEX OF FIXL HEME DOMAIN

Gong, W., Hao, B., Chan, M.K.

(2000) Biochemistry 39: 3955-3962

Released	2000-12-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	FIXL PROTEIN (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1DZ8 \| pdb_00001dz8	Download File View File

oxygen complex of p450cam from pseudomonas putida

Schlichting, I., Berendzen, J., Chu, K., Stock, A.M., Maves, S.A., Benson, D.E., Sweet, R.M., Ringe, D., Petsko, G.A., Sligar, S.G.

(2000) Science 287: 1615

Released	2000-03-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	CAM, HEM, K, OXY, TRS

Explore in 3D

1E5D \| pdb_00001e5d	Download File View File

RUBREDOXIN OXYGEN:OXIDOREDUCTASE (ROO) FROM ANAEROBE DESULFOVIBRIO GIGAS

Frazao, C., Silva, G., Gomes, C.M., Matias, P., Coelho, R., Sieker, L., Macedo, S., Liu, M.Y., Oliveira, S., Teixeira, M., Xavier, A.V., Rodrigues-Pousada, C., Carrondo, M.A., Le Gall, J.

(2000) Nat Struct Biol 7: 1041

Released	2000-11-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	RUBREDOXIN\:OXYGEN OXIDOREDUCTASE (protein)
Unique Ligands	FEO, FMN, OXY

Explore in 3D

1F65 \| pdb_00001f65	Download File View File

CRYSTAL STRUCTURE OF OXY SPERM WHALE MYOGLOBIN MUTANT Y(B10)Q(E7)R(E10)

Brunori, M., Cutruzzola, F., Savino, C., Travaglini-Allocatelli, C., Vallone, B., Gibson, Q.H.

(1999) Biophys J 76: 1259-1269

Released	2000-07-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	HEM, OXY, SO4

Explore in 3D

1FAW \| pdb_00001faw	Download File View File

GRAYLAG GOOSE HEMOGLOBIN (OXY FORM)

Liang, Y.-H., Liu, X.-Z., Liu, S.-H., Lu, G.-Y.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1850-1856

Released	2001-12-05
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Anser anser
Macromolecule	HEMOGLOBIN (ALPHA SUBUNIT) (protein) HEMOGLOBIN (BETA SUBUNIT) (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1GBV \| pdb_00001gbv	Download File View File

(ALPHA-OXY, BETA-(C112G)DEOXY) T-STATE HUMAN HEMOGLOBIN

Vasquez, G.B., Ji, X., Pechik, I., Fronticelli, C., Gilliland, G.L.

(1999) Biophys J 76: 88-97

Released	1997-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1GW0 \| pdb_00001gw0	Download File View File

Crystal Structure of Laccase from Melanocarpus albomyces in Four Copper Form

Hakulinen, N., Kiiskinen, L.-L., Kruus, K., Saloheimo, M., Koivula, A., Rouvinen, J.

(2002) Nat Struct Biol 9: 601-605

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Melanocarpus albomyces
Macromolecule	LACCASE-1 (protein)
Unique Ligands	CL, CU, NAG, OXY, SO4
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

1GZX \| pdb_00001gzx	Download File View File

Oxy T State Haemoglobin - Oxygen bound at all four haems

Paoli, M., Liddington, R., Tame, J., Wilkinson, A., Dodson, G.

(1996) J Mol Biology 256: 775

Released	2002-07-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1H57 \| pdb_00001h57	Download File View File

Structure of horseradish peroxidase C1A compound III

Berglund, G.I., Carlsson, G.H., Hajdu, J.

(2002) Nature 417: 463

Released	2002-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Armoracia rusticana
Macromolecule	PEROXIDASE C1A (protein)
Unique Ligands	ACT, CA, HEM, OXY, PEO

Explore in 3D

1HBI \| pdb_00001hbi	Download File View File

CRYSTAL STRUCTURE OF OXYGENATED SCAPHARCA DIMERIC HEMOGLOBIN AT 1.7 ANGSTROMS RESOLUTION

Royer Junior, W.E., Condon, P.J.

(1994) J Biological Chem 269: 25259-25267

Released	1994-10-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Anadara inaequivalvis
Macromolecule	HEMOGLOBIN (OXY) (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1HGC \| pdb_00001hgc	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF T STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE HAEMOGLOBINS: T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN

Liddington, R., Derewenda, Z., Dodson, E., Hubbard, R., Dodson, G.

(1992) J Mol Biology 228: 551-579

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN (DEOXY) (BETA CHAIN) (protein) HEMOGLOBIN (OXY) (ALPHA CHAIN) (protein)
Unique Ligands	HEM, OXY

Explore in 3D

1HHO \| pdb_00001hho	Download File View File

STRUCTURE OF HUMAN OXYHAEMOGLOBIN AT 2.1 ANGSTROMS RESOLUTION

Shaanan, B.

(1983) J Mol Biology 171: 31-59

Released	1983-10-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN A (OXY) (ALPHA CHAIN) (protein) HEMOGLOBIN A (OXY) (BETA CHAIN) (protein)
Unique Ligands	HEM, OXY, PO4

Explore in 3D

1HJ3 \| pdb_00001hj3	Download File View File

Cytochrome cd1 Nitrite Reductase, dioxygen complex

Sjogren, T., Hajdu, J.

(2001) J Biological Chem 276: 13072-13076

Released	2001-01-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Paracoccus pantotrophus
Macromolecule	Nitrite reductase (protein)
Unique Ligands	DHE, GOL, HEC, OXY, SO4

Explore in 3D

1HMO \| pdb_00001hmo	Download File View File

THE STRUCTURE OF DEOXY AND OXY HEMERYTHRIN AT 2.0 ANGSTROMS RESOLUTION

Holmes, M.A., Letrong, I., Turley, S., Sieker, L.C., Stenkamp, R.E.

(1991) J Mol Biology 218: 583-593

Released	1992-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Themiste dyscritum
Macromolecule	HEMERYTHRIN (protein)
Unique Ligands	ACE, FEO, OXY

Explore in 3D

1IDR \| pdb_00001idr	Download File View File

CRYSTAL STRUCTURE OF THE TRUNCATED-HEMOGLOBIN-N FROM MYCOBACTERIUM TUBERCULOSIS

Milani, M., Pesce, A., Ascenzi, P., Guertin, M., Bolognesi, M.

(2001) EMBO J 20: 3902-3909

Released	2001-08-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HEMOGLOBIN HBN (protein)
Unique Ligands	HEM, OXY, PO4

Explore in 3D

1J30 \| pdb_00001j30	Download File View File

The crystal structure of sulerythrin, a rubrerythrin-like protein from a strictly aerobic and thermoacidiphilic archaeon

Fushinobu, S., Shoun, H., Wakagi, T.

(2003) Biochemistry 42: 11707-11715

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	144aa long hypothetical rubrerythrin (protein)
Unique Ligands	FE, OXY, ZN

Explore in 3D

1KR7 \| pdb_00001kr7	Download File View File

Crystal structure of the nerve tissue mini-hemoglobin from the nemertean worm Cerebratulus lacteus

Pesce, A., Nardini, M., Dewilde, S., Geuens, E., Yamauchi, k., Ascenzi, P., Riggs, A.F., Moens, L., Bolognesi, M.

(2002) Structure 10: 725-735

Released	2002-05-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cerebratulus lacteus
Macromolecule	Neural globin (protein)
Unique Ligands	ACT, HEM, OXY, SO4

Explore in 3D

1LS1 \| pdb_00001ls1	Download File View File

T. aquaticus Ffh NG Domain at 1.1A Resolution

Ramirez, U.D., Minasov, G., Freymann, D.M.

(2002) J Mol Biology 320: 783-799

Released	2002-11-16
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Thermus aquaticus
Macromolecule	SIGNAL RECOGNITION PARTICLE PROTEIN (protein)
Unique Ligands	MG, OXY