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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Aquifex aeolicus VF5"

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Search Summary

This query matches 317 Structures.

Refinements

Structure Determination Methodology

experimental (317)

Scientific Name of Source Organism

	Aquifex aeolicus VF5 (317)
	Thermotoga maritima MSB8 (11)
	Aquifex aeolicus (7)
	Rattus norvegicus (7)
	synthetic construct (6)
	Homo sapiens (5)
	Lama glama (5)
	Lambdavirus lambda (5)
	Mus musculus (3)
	Pseudomonas aeruginosa PAO1 (3)

More...

Taxonomy

	Bacteria (317)
	Eukaryota (18)
	Duplodnaviria (6)
	other sequences (6)
	Archaea (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (282)
	ELECTRON MICROSCOPY (31)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (317)
	RNA (20)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (18)
	1.5 - 2.0 (76)
	2.0 - 2.5 (91)
	2.5 - 3.0 (45)
	3.0 - 3.5 (51)
	3.5 - 4.0 (21)
	4.0 - 4.5 (7)
	> 4.5 (4)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (67)
	2010 - 2014 (67)
	2015 - 2019 (92)
	2020 - 2024 (73)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (91)
	Translocases (32)
	Hydrolases (41)
	Oxidoreductases (18)
	Lyases (7)
	Ligases (4)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (68)
	MemProtMD (53)
	mpstruc (45)
	OPM (38)

Symmetry Type

	Asymmetric (196)
	Cyclic (121)
	Dihedral (21)
	Tetrahedral (5)
	Icosahedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (50)
	Artifacts (16)
	Membrane and cell surface proteins and peptides (29)
	Alpha and beta proteins (a+b) (20)
	All beta proteins (8)
	All alpha proteins (9)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 317 Structures

Page 1 of 13

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1GYZ \| pdb_00001gyz	Download File View File

Bacterial ribosomal protein L20 from Aquifex aeolicus

Raibaud, S., Lebars, I., Bontems, F., Dardel, F.

(2002) J Mol Biology 323: 143

Released	2002-05-10
Method	SOLUTION NMR
Organisms	Aquifex aeolicus VF5
Macromolecule	50S RIBOSOMAL PROTEIN L20 (protein)

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1ORJ \| pdb_00001orj	Download File View File

FLAGELLAR EXPORT CHAPERONE

Evdokimov, A.G., Phan, J., Tropea, J.E., Routzahn, K.M., Peters III, H.K., Pokross, M., Waugh, D.S.

(2003) Nat Struct Biol 10: 789-793

Released	2003-09-16
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	flagellar protein FliS (protein)

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1ORY \| pdb_00001ory	Download File View File

FLAGELLAR EXPORT CHAPERONE IN COMPLEX WITH ITS COGNATE BINDING PARTNER

Evdokimov, A.G., Phan, J., Tropea, J.E., Routzahn, K.M., Peters III, H.K., Pokross, M., Waugh, D.S.

(2003) Nat Struct Biol 10: 789-793

Released	2003-09-16
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Aquifex aeolicus Aquifex aeolicus VF5
Macromolecule	Flagellin (protein) flagellar protein FliS (protein)
Unique Ligands	PO4

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1R4V \| pdb_00001r4v	Download File View File

1.9A crystal structure of protein AQ328 from Aquifex aeolicus

Qiu, Y., Tereshko, V., Kim, Y., Zhang, R., Collart, F., Joachimiak, A., Kossiakoff, A., Midwest Center for Structural Genomics (MCSG)

(2006) Proteins 62: 8-16

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Hypothetical protein AQ_328 (protein)
Unique Ligands	CAC, ZN

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1T6C \| pdb_00001t6c	Download File View File

Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member

Kristensen, O., Laurberg, M., Liljas, A., Kastrup, J.S., Gajhede, M.

(2004) Biochemistry 43: 8894-8900

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	exopolyphosphatase (protein)
Unique Ligands	CA, CL, IOD, MPD

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1T6D \| pdb_00001t6d	Download File View File

MIRAS phasing of the Aquifex aeolicus Ppx/GppA phosphatase: crystal structure of the type II variant

Kristensen, O., Laurberg, M., Liljas, A., Kastrup, J.S., Gajhede, M.

(2004) Biochemistry 43: 8894-8900

Released	2004-08-03
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	exopolyphosphatase (protein)
Unique Ligands	CL, TRS

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1T6T \| pdb_00001t6t	Download File View File

putative protein from Aquifex aeolicus

Cuff, M.E., Zhou, M., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	putative protein (protein)

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1ULZ \| pdb_00001ulz	Download File View File

Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase

Kondo, S., Nakajima, Y., Sugio, S., Yong-Biao, J., Sueda, S., Kondo, H.

(2004) Acta Crystallogr D Biol Crystallogr 60: 486-492

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	pyruvate carboxylase n-terminal domain (protein)

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1XM7 \| pdb_00001xm7	Download File View File

The Crystal Structure of the Protein of Unknown Function AQ665 from Aquifex aeolicus

Zhang, R., Zhou, M., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	hypothetical protein aq_1665 (protein)

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1YVU \| pdb_00001yvu	Download File View File

Crystal structure of A. aeolicus Argonaute

Yuan, Y.R., Pei, Y., Ma, J.B., Kuryavyi, V., Zhadina, M., Meister, G., Chen, H.Y., Dauter, Z., Tuschl, T., Patel, D.J.

(2005) Mol Cell 19: 405-419

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	hypothetical protein aq_1447 (protein)
Unique Ligands	CA

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1ZIT \| pdb_00001zit	Download File View File

Structure of the receiver domain of NtrC4 from Aquifex aeolicus

Matsubara, K., Pelton, J.G., Wemmer, D.E.

To be published

Released	2006-05-09
Method	SOLUTION NMR
Organisms	Aquifex aeolicus VF5
Macromolecule	transcriptional regulator (NtrC family) (protein)

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2A65 \| pdb_00002a65	Download File View File

Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters

Yamashita, A., Singh, S.K., Kawate, T., Jin, Y., Gouaux, E.

(2005) Nature 437: 215-223

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Na(+):neurotransmitter symporter (Snf family) (protein)
Unique Ligands	BOG, CL, LEU, NA

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2DBO \| pdb_00002dbo	Download File View File

Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus

Ishii, T., Shibata, R., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-15
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	D-tyrosyl-tRNA(Tyr) deacylase (protein)

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2DQ3 \| pdb_00002dq3	Download File View File

Crystal structure of aq_298

Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-06-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Seryl-tRNA synthetase (protein)
Unique Ligands	SSA

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2E8B \| pdb_00002e8b	Download File View File

Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5

Kumarevel, T.S., Malathy sony, S.M., Ponnuswamy, M.N., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Probable molybdopterin-guanine dinucleotide biosynthesis protein A (protein)