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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Escherichia coli 'BL21-Gold(DE3)pLysS AG"

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Escherichia coli 'BL21-Gold(DE3)pLysS AG (25)
	Homo sapiens (4)
	Thermoflavifilum thermophilum (4)
	Geobacter sulfurreducens (3)
	Xenopus laevis (3)
	synthetic construct (2)
	Legionella pneumophila (1)

Taxonomy

	Bacteria (25)
	Eukaryota (4)
	other sequences (2)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (7)

Polymer Entity Type

	Protein (25)
	DNA (11)
	RNA (9)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (8)
	3.0 - 3.5 (7)
	4.0 - 4.5 (3)

Release Date

2020 - 2024 (25)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (2)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (2)
	MemProtMD (1)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (18)
	Cyclic (5)
	Dihedral (1)
	Helical (1)

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1 to 25 of 25 Structures

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6LM2	Download File View File

Crystal structure of Zinc binding protein ZinT from E. coli

Xiang, L., Zhang, G., Zhou, J.

To be published

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.13008410001 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	Metal-binding protein ZinT (protein)
Unique Ligands	ZN

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7DGU	Download File View File

De novo designed protein H4A1R

Xu, Y., Liao, S., Chen, Q., Liu, H.

(2022) Nature 602: 523-528

Released	2021-11-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	de novo designed protein H4A1R (protein)

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7DGW	Download File View File

De novo designed protein H4A2S

Xu, Y., Liao, S., Chen, Q., Liu, H.

(2022) Nature 602: 523-528

Released	2021-11-24
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	de novo designed protein H4A2S (protein)
Unique Ligands	EPE

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7DGY	Download File View File

De novo designed protein H4C2R

Xu, Y., Liao, S., Chen, Q., Liu, H.

(2022) Nature 602: 523-528

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	de novo designed protein H4C2R (protein)

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7N4T	Download File View File

Low conductance mechanosensitive channel YnaI

Catalano, C., Ben-Hail, D., Qiu, W., des Georges, A., Guo, Y.

(2021) Membranes (Basel) 11:

Released	2022-04-20
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	Low conductance mechanosensitive channel YnaI (protein)
Unique Ligands	PEE

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7RAZ	Download File View File

Small conductance mechanosensitive channel MscS

Catalano, C., Ben-Hail, D., Qiu, W., des Georges, A., Guo, Y.

To be published

Released	2022-07-13
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	Small-conductance mechanosensitive channel (protein)
Unique Ligands	PTY

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7X2R	Download File View File

Crystal structure of the E. coli transcription termination factor Rho

Zheng, J., Wang, B.

To be published

Released	2022-04-27
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	Transcription termination factor Rho (protein)

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7ZP0	Download File View File

Crystal structure of CusS histidine kinase catalytic core from Escherichia coli

Cociurovscaia, A., Bujacz, G., Pietrzyk-Brzezinska, A.

(2022) J Struct Biol 214: 107883-107883

Released	2022-08-31
Method	X-RAY DIFFRACTION 1.398 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	Sensor protein (protein)
Unique Ligands	EDO

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8I9O	Download File View File

ecCTPS filament bound with CTP, NADH, DON

Guo, C.J., Liu, J.L.

(2024) mLife 3: 240-250

Released	2024-02-14
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	CTP synthase (protein)
Unique Ligands	ADE, CTP, MG, ONL

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8IFK	Download File View File

Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex

Zhang, J.T., Jia, N.

(2024) Nat Chem Biol 20: 503-511

Released	2024-01-17
Method	ELECTRON MICROSCOPY 2.54 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Thermoflavifilum thermophilum
Macromolecule	Piwi domain-containing protein (protein) TIR domain-containing protein (protein) guide RNA (nucleic acid) target ssDNA (nucleic acid)
Unique Ligands	MG

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8IFL	Download File View File

Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1

Zhang, J.T., Jia, N.

(2024) Nat Chem Biol 20: 503-511

Released	2024-01-17
Method	ELECTRON MICROSCOPY 3.11 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Thermoflavifilum thermophilum
Macromolecule	Piwi domain-containing protein (protein) TIR domain-containing protein (protein) guide RNA (nucleic acid) target ssDNA (nucleic acid)
Unique Ligands	MG

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8IFM	Download File View File

Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2

Zhang, J.T., Jia, N.

(2024) Nat Chem Biol 20: 503-511

Released	2024-01-17
Method	ELECTRON MICROSCOPY 2.92 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Thermoflavifilum thermophilum
Macromolecule	Piwi domain-containing protein (protein) TIR domain-containing protein (protein) guide RNA (nucleic acid) target ssDNA (nucleic acid)
Unique Ligands	MG

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8K34	Download File View File

Cryo-EM structure of SPARTA gRNA binary complex

Zhang, J.T., Jia, N.

(2024) Nat Chem Biol 20: 503-511

Released	2024-01-17
Method	ELECTRON MICROSCOPY 2.81 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Thermoflavifilum thermophilum
Macromolecule	Piwi domain-containing protein (protein) TIR domain-containing protein (protein) RNA (5'-R(PAPAPAPCPGPGPCPUPCPUPAPAPUPCPUPAPUPUPAPGP*U)-3') (nucleic acid)
Unique Ligands	MG

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8OO6	Download File View File

Pol I bound to extended and displaced DNA section - closed conformation

Botto, M., Borsellini, A., Lamers, M.H.

(2023) Nat Struct Mol Biol 30: 1505-1515

Released	2023-08-09
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG synthetic construct
Macromolecule	DNA polymerase I (protein) Displaced primer (nucleic acid) Extending Primer (nucleic acid) Template DNA (nucleic acid)
Unique Ligands	MG

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8OOY	Download File View File

Pol I bound to extended and displaced DNA section - open conformation

Botto, M., Borsellini, A., Lamers, M.H.

(2023) Nat Struct Mol Biol 30: 1505-1515

Released	2023-08-09
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG synthetic construct
Macromolecule	DNA polymerase I (protein) Displacing Primer (nucleic acid) Extending Primer (hybrid) Template DNA (hybrid)
Unique Ligands	MG

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8QEW	Download File View File

Eosinophil Derived Neurotoxin/RNase 2 in complex with Tartrate

Li, J., Kang, X., Prats-Ejarque, G., Boix, E.

To be published

Released	2024-09-11
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	Non-secretory ribonuclease (protein)
Unique Ligands	TLA

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8QFS	Download File View File

Cryo-EM structure of SidH from Legionella pneumophila

Sharma, R., Weis, F., Bhogaraju, S.

(2023) Nat Commun 14: 7068-7068

Released	2023-10-11
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG
Macromolecule	Elongation factor Tu (protein) Protein SidH (protein) tRNA (nucleic acid)
Unique Ligands	GTP, MG

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8QHC	Download File View File

Cryo-EM structure of SidH from Legionella pneumophila in complex with LubX

Sharma, R., Adams, M., Bhogaraju, S.

(2023) Nat Commun 14: 7068-7068

Released	2023-10-11
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Legionella pneumophila
Macromolecule	E3 ubiquitin--protein ligase (protein) Elongation factor Tu (protein) Protein SidH (protein) t-RNA (nucleic acid)
Unique Ligands	GTP, MG

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8T9F	Download File View File

Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1

Abini-Agbomson, S., Armache, K.-J.

(2023) Mol Cell 83: 2872-2883.e7

Released	2023-09-06
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	SAM

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8T9H	Download File View File

Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1

Abini-Agbomson, S., Armache, K.-J.

(2023) Mol Cell 83: 2872-2883.e7

Released	2023-09-13
Method	ELECTRON MICROSCOPY 3.37 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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8UW1	Download File View File

Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome

Gretarsson, K., Abini-Agbomson, S., Armache, K.-J., Lu, C.

(2024) Sci Adv 10: eadp0975-eadp0975

Released	2024-09-11
Method	ELECTRON MICROSCOPY 2.88 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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8Y7Z	Download File View File

Cryo-EM structure of the monomeric SPARSA gRNA-ssDNA complex

Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.

(2024) Nat Commun 15: 8610-8610

Released	2024-10-16
Method	ELECTRON MICROSCOPY 2.57 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Geobacter sulfurreducens
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (25-mer) (nucleic acid) RNA (21-mer) (nucleic acid)
Unique Ligands	MG

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8Y80	Download File View File

Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complex

Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.

(2024) Nat Commun 15: 8610-8610

Released	2024-10-16
Method	ELECTRON MICROSCOPY 3.38 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Geobacter sulfurreducens
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (25-mer) (nucleic acid) RNA (21-mer) (nucleic acid)
Unique Ligands	MG

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8Y82	Download File View File

Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complex

Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.

(2024) Nat Commun 15: 8610-8610

Released	2024-10-16
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Geobacter sulfurreducens
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (25-mer) (nucleic acid) RNA (21-mer) (nucleic acid)
Unique Ligands	AMP, MG

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9CC3	Download File View File

Human Mitochondrial LONP1 Stall State + casein

Mindrebo, J.T., Lander, G.C.

(2024) bioRxiv

Released	2024-08-07
Method	ELECTRON MICROSCOPY 3.23 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Homo sapiens
Macromolecule	Endogenous Co-purified substrate modeled as unknown residues (protein) Lon protease homolog, mitochondrial (protein)
Unique Ligands	ADP, MG