RCSB PDB: Search

1YF2 \| pdb_00001yf2	Download File View File

Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications

Kim, J.S., Degiovanni, A., Jancarik, J., Adams, P.D., Yokota, H.A., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2005) Proc Natl Acad Sci U S A 102: 3248-3253

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Type I restriction-modification enzyme, S subunit (protein)

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2EB0 \| pdb_00002eb0	Download File View File

Crystal structure of Methanococcus jannaschii putative family II inorganic pyrophosphatase

Shimada, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Manganese-dependent inorganic pyrophosphatase (protein)
Unique Ligands	MN

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2EFV \| pdb_00002efv	Download File View File

Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii

Kumarevel, T.S., Karthe, P., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2017) Biochem Biophys Res Commun 482: 264-269

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Hypothetical protein MJ0366 (protein)
Unique Ligands	PO4

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2EIF \| pdb_00002eif	Download File View File

Eukaryotic translation initiation factor 5A from Methanococcus jannaschii

Kim, K.K., Hung, L.W., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(1998) Proc Natl Acad Sci U S A 95: 10419-10424

Released	1999-10-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	PROTEIN (EUKARYOTIC TRANSLATION INITIATION FACTOR 5A) (protein)

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2EKY \| pdb_00002eky	Download File View File

Crystal Structure of hypothetical protein MJ1052 from Methanocaldococcus jannaschii (Form 1)

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	UPF0045 protein MJ1052 (protein)

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2EPI \| pdb_00002epi	Download File View File

Crystal Structure pf hypothetical protein MJ1052 from Methanocaldococcus jannascii (Form 2)

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	UPF0045 protein MJ1052 (protein)

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2H6R \| pdb_00002h6r	Download File View File

Crystal Structure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii

Gayathri, P., Banerjee, M., Vijayalakshmi, A., Balaram, H., Balaram, P., Murthy, M.R.N.

(2007) Acta Crystallogr D Biol Crystallogr 63: 206-220

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Triosephosphate isomerase (protein)

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2LXN \| pdb_00002lxn	Download File View File

Solution NMR structure of glutamine amido transferase subunit of gaunosine monophosphate synthetase from Methanocaldococcus jannaschii

Ali, R., Kumar, S., Balaram, H., Sarma, S.P.

(2012) Biomol NMR Assign 6: 193-196

Released	2013-06-12
Method	SOLUTION NMR
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	GMP synthase [glutamine-hydrolyzing] subunit A (protein)

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2MZB \| pdb_00002mzb	Download File View File

Solution structural studies of GTP:adenosylcobinamide-phosphate guanylyltransferase (CobY) from Methanocaldococcus jannaschii

Singarapu, K., Otte, M., Tonelli, M., Westler, W.M., Escalante-Semerena, J.C., Markley, J.L.

(2015) PLoS One 10: e0141297-e0141297

Released	2015-11-11
Method	SOLUTION NMR
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Adenosylcobinamide-phosphate guanylyltransferase (protein)

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2OSD \| pdb_00002osd	Download File View File

Crystal structure of a vinyl-4-reductase family protein (mj_1460) from methanocaldococcus jannaschii dsm at 2.40 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Hypothetical protein MJ1460 (protein)
Unique Ligands	CA, CL, EDO, ZN

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2OSO \| pdb_00002oso	Download File View File

Crystal structure of a vinyl-4-reductase family protein (mj_1460) from methanocaldococcus jannaschii dsm at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Hypothetical protein MJ1460 (protein)
Unique Ligands	ACT, CL, GOL, ZN

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2OYN \| pdb_00002oyn	Download File View File

Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120

Bonanno, J.B., Dickey, M., Bain, K.T., Lau, C., Romero, R., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Hypothetical protein MJ0056 (protein)
Unique Ligands	CDP, NA

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2P9M \| pdb_00002p9m	Download File View File

Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661

Zhao, M., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Zhu, J., Swindell II, J.T., Chen, L., Fu, Z.-Q., Charz, J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Hypothetical protein MJ0922 (protein)

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2PHP \| pdb_00002php	Download File View File

Crystal structure of the C-terminal domain of protein MJ0236 (Y236_METJA)

Eswaramoorthy, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Uncharacterized protein MJ0236 (protein)
Unique Ligands	CL

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2PKP \| pdb_00002pkp	Download File View File

Crystal structure of 3-isopropylmalate dehydratase (leuD)from Methhanocaldococcus Jannaschii DSM2661 (MJ1271)

Jeyakanthan, J., Gayathri, D.R., Velmurugan, D., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2010) Biochemistry 49: 2687-2696

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Homoaconitase small subunit (protein)
Unique Ligands	PEG, ZN

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2PZZ \| pdb_00002pzz	Download File View File

2.2 A resolution crystal structure of UPF0201 protein from Methanococcus jannaschii

Rao, K.N., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2008) PLoS One 3: e3903-e3903

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	UPF0201 protein MJ1564 (protein)

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2QTD \| pdb_00002qtd	Download File View File

Crystal structure of a putative dinitrogenase (mj0327) from methanocaldococcus jannaschii dsm at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1367-1380

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Uncharacterized protein MJ0327 (protein)
Unique Ligands	PG4, TRS

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2RGW \| pdb_00002rgw	Download File View File

Catalytic Subunit of M. jannaschii Aspartate Transcarbamoylase

Vitali, J., Colaneri, M.J., Kantrowitz, E.R.

(2008) Proteins 71: 1324-1334

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Macromolecule	Aspartate carbamoyltransferase (protein)
Unique Ligands	SO4

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2VAP \| pdb_00002vap	Download File View File

FtsZ GDP M. jannaschii

Oliva, M.A., Lowe, J.

(2007) J Mol Biology 373: 1229

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	CELL DIVISION PROTEIN FTSZ HOMOLOG 1 (protein)
Unique Ligands	GDP

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2VWB \| pdb_00002vwb	Download File View File

Structure of the archaeal Kae1-Bud32 fusion protein MJ1130: a model for the eukaryotic EKC-KEOPS subcomplex involved in transcription and telomere homeostasis.

Hecker, A., Lopreiato, R., Graille, M., Collinet, B., Forterre, P., Domenico, L., van Tilbeurgh, H.

(2008) EMBO J 27: 2340

Released	2008-08-19
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	PUTATIVE O-SIALOGLYCOPROTEIN ENDOPEPTIDASE (protein)
Unique Ligands	ANP

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2YV1 \| pdb_00002yv1	Download File View File

Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Methanocaldococcus jannaschii DSM 2661

Niwa, H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Succinyl-CoA ligase [ADP-forming] subunit alpha (protein)

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2YWJ \| pdb_00002ywj	Download File View File

Crystal structure of uncharacterized conserved protein from Methanocaldococcus jannaschii

Manzoku, M., Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Glutamine amidotransferase subunit pdxT (protein)

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2YXD \| pdb_00002yxd	Download File View File

Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)

Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] (protein)
Unique Ligands	MES, SO4

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2YXE \| pdb_00002yxe	Download File View File

Crystal structure of L-isoaspartyl protein carboxyl methyltranferase

Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Protein-L-isoaspartate O-methyltransferase (protein)
Unique Ligands	ACT

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2YXG \| pdb_00002yxg	Download File View File

Crystal structure of Dihyrodipicolinate Synthase (dapA)

Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 1222-1226

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Dihydrodipicolinate synthase (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1YF2 | pdb_00001yf2

2EB0 | pdb_00002eb0

2EFV | pdb_00002efv

2EIF | pdb_00002eif

2EKY | pdb_00002eky

2EPI | pdb_00002epi

2H6R | pdb_00002h6r

2LXN | pdb_00002lxn

2MZB | pdb_00002mzb

2OSD | pdb_00002osd

2OSO | pdb_00002oso

2OYN | pdb_00002oyn

2P9M | pdb_00002p9m

2PHP | pdb_00002php

2PKP | pdb_00002pkp

2PZZ | pdb_00002pzz

2QTD | pdb_00002qtd

2RGW | pdb_00002rgw

2VAP | pdb_00002vap

2VWB | pdb_00002vwb

2YV1 | pdb_00002yv1

2YWJ | pdb_00002ywj

2YXD | pdb_00002yxd

2YXE | pdb_00002yxe

2YXG | pdb_00002yxg