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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Satellite tobacco mosaic virus"

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This query matches 25 Structures.

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Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Homo sapiens (10)
	Xenopus laevis (4)
	Escherichia coli (3)
	Escherichia coli K-12 (3)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
	Methanocaldococcus jannaschii (1)
	Pyrococcus furiosus (1)
	Saccharolobus solfataricus (1)
	Synechococcus elongatus PCC 6301 (1)

Taxonomy

	Eukaryota (14)
	Bacteria (8)
	Archaea (3)

Experimental Method

	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (25)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	> 4.5 (2)

Release Date

	1995 - 1999 (8)
	2000 - 2004 (7)
	2005 - 2009 (6)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (13)
	Lyases (6)
	Oxidoreductases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (21)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	All alpha proteins (7)
	Alpha and beta proteins (a/b) (4)
	All beta proteins (2)
	Small proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 25 Structures

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1BIX \| pdb_00001bix	Download File View File

THE CRYSTAL STRUCTURE OF THE HUMAN DNA REPAIR ENDONUCLEASE HAP1 SUGGESTS THE RECOGNITION OF EXTRA-HELICAL DEOXYRIBOSE AT DNA ABASIC SITES

Gorman, M.A., Morera, S., Rothwell, D.G., De La Fortelle, E., Mol, C.D., Tainer, J.A., Hickson, I.D., Freemont, P.S.

(1997) EMBO J 16: 6548-6558

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	AP ENDONUCLEASE 1 (protein)
Unique Ligands	PT, SM

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1BKN \| pdb_00001bkn	Download File View File

CRYSTAL STRUCTURE OF AN N-TERMINAL 40KD FRAGMENT OF E. COLI DNA MISMATCH REPAIR PROTEIN MUTL

Yang, W., Ban, C.

(1998) Cell 95: 541-552

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12
Macromolecule	MUTL (protein)

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1E9N \| pdb_00001e9n	Download File View File

A second divalent metal ion in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1, and its implications for the catalytic mechanism

Beernink, P.T., Segelke, B.W., Rupp, B.

(2001) J Mol Biology 307: 1023

Released	2001-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE (protein)
Unique Ligands	PB

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1EA6 \| pdb_00001ea6	Download File View File

N-terminal 40kDa fragment of NhPMS2 complexed with ADP

Guarne, A., Junop, M.S., Yang, W.

(2001) EMBO J 20: 5521

Released	2001-11-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	PMS1 PROTEIN HOMOLOG 2 (protein)
Unique Ligands	ADP, MG

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1H7S \| pdb_00001h7s	Download File View File

N-terminal 40kDa fragment of human PMS2

Guarne, A., Junop, M.S., Yang, W.

(2001) EMBO J 20: 5521

Released	2001-11-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	PMS1 PROTEIN HOMOLOG 2 (protein)

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1H7U \| pdb_00001h7u	Download File View File

hPMS2-ATPgS

Guarne, A., Junop, M.S., Yang, W.

(2001) EMBO J 20: 5521

Released	2001-11-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	MISMATCH REPAIR ENDONUCLEASE PMS2 (protein)
Unique Ligands	AGS, MG

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1HD7 \| pdb_00001hd7	Download File View File

A Second Divalent Metal Ion in the Active Site of a New Crystal Form of Human Apurinic/Apyridinimic Endonuclease, Ape1, and its Implications for the Catalytic Mechanism

Beernink, P.T., Segelke, B.W., Rupp, B.

(2001) J Mol Biology 307: 1023

Released	2001-02-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE (protein)
Unique Ligands	PB

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1MUN \| pdb_00001mun	Download File View File

CATALYTIC DOMAIN OF MUTY FROM ESCHERICHIA COLI D138N MUTANT

Guan, Y., Tainer, J.A.

(1998) Nat Struct Biol 5: 1058-1064

Released	1999-08-26
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Escherichia coli
Macromolecule	ADENINE GLYCOSYLASE (protein)
Unique Ligands	GOL, IMD, SF4

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1MUT \| pdb_00001mut	Download File View File

NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE

Abeygunawardana, C., Weber, D.J., Gittis, A.G., Frick, D.N., Lin, J., Miller, A.-F., Bessman, M.J., Mildvan, A.S.

(1995) Biochemistry 34: 14997-15005

Released	1996-04-03
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE (protein)

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1MUY \| pdb_00001muy	Download File View File

CATALYTIC DOMAIN OF MUTY FROM ESCHERICHIA COLI

Guan, Y., Tainer, J.A.

(1998) Nat Struct Biol 5: 1058-1064

Released	1999-08-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	ADENINE GLYCOSYLASE (protein)
Unique Ligands	GOL, IMD, SF4

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1QNF \| pdb_00001qnf	Download File View File

STRUCTURE OF PHOTOLYASE

Miki, K., Kitadokoro, K.

(1997) Nat Struct Biol 4: 887-891

Released	1998-01-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Synechococcus elongatus PCC 6301
Macromolecule	PHOTOLYASE (protein)
Unique Ligands	FAD, HDF

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1QNT \| pdb_00001qnt	Download File View File

X-ray structure of human O6alkylguanine-DNA alkyltransferase

Wibley, J.E.A., Moody, P.C.E.

(2000) Nucleic Acids Res 28: 393

Released	1999-12-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE (protein)

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1TP4 \| pdb_00001tp4	Download File View File

Solution structure of the XPC binding domain of hHR23A protein

Kamionka, M., Feigon, J.

(2004) Protein Sci 13: 2370-2377

Released	2004-09-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UV excision repair protein RAD23 homolog A (protein)

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1US8 \| pdb_00001us8	Download File View File

The Rad50 signature motif: essential to ATP binding and biological function

Moncalian, G., Lengsfeld, B., Bhaskara, V., Hopfner, K.P., Karcher, A., Alden, E., Tainer, J.A., Paull, T.T.

(2004) J Mol Biology 335: 937

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE (protein)

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1W3S \| pdb_00001w3s	Download File View File

The crystal structure of RecO from Deinococcus radiodurans.

Leiros, I., Timmins, J., Hall, D.R., Leonard, G.A., McSweeney, S.M.

(2005) EMBO J 24: 906

Released	2005-02-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	HYPOTHETICAL PROTEIN DR0819 (protein)
Unique Ligands	ZN

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1XPA \| pdb_00001xpa	Download File View File

SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE

Ikegami, T., Kuraoka, I., Saijo, M., Kodo, N., Kyogoku, Y., Morikawa, K., Tanaka, K., Shirakawa, M.

(1998) Nat Struct Biol 5: 701-706

Released	1999-07-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	XPA (protein)
Unique Ligands	ZN

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6LHS \| pdb_00006lhs	Download File View File

High resolution structure of FANCA C-terminal domain (CTD)

Jeong, E., Lee, S., Shin, J., Kim, Y., Scharer, O., Kim, Y., Kim, H., Cho, Y.

(2020) Nucleic Acids Res 48: 3328-3342

Released	2020-03-25
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Xenopus laevis
Macromolecule	Fanconi anemia complementation group A (protein)

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6LHU \| pdb_00006lhu	Download File View File

High resolution structure of FANCA C-terminal domain (CTD)

Jeong, E., Lee, S., Shin, J., Kim, Y., Kim, J., Scharer, O., Kim, Y., Kim, H., Cho, Y.

(2020) Nucleic Acids Res 48: 3328-3342

Released	2020-03-25
Method	ELECTRON MICROSCOPY 3.46 Å
Organisms	Xenopus laevis
Macromolecule	Fanconi anemia complementation group A (protein)

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6LHV \| pdb_00006lhv	Download File View File

Structure of FANCA and FANCG Complex

Jeong, E., Lee, S., Shin, J., Kim, Y., Scharer, O., Kim, Y., Kim, H., Cho, Y.

(2020) Nucleic Acids Res 48: 3328-3342

Released	2020-03-25
Method	ELECTRON MICROSCOPY 4.59 Å
Organisms	Xenopus laevis
Macromolecule	Fanconi anemia complementation group A (protein) Fanconi anemia complementation group G (protein)

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6LHW \| pdb_00006lhw	Download File View File

Structure of N-terminal and C-terminal domains of FANCA

Jeong, E., Lee, S., Shin, J., Kim, Y., Kim, J., Scharer, O., Kim, Y., Kim, H., Cho, Y.

(2020) Nucleic Acids Res 48: 3328-3342

Released	2020-03-25
Method	ELECTRON MICROSCOPY 4.84 Å
Organisms	Xenopus laevis
Macromolecule	Fanconi anemia complementation group A (protein)

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2AQ0 \| pdb_00002aq0	Download File View File

Solution structure of the human homodimeric dna repair protein XPF

Das, D., Tripsianes, K., Folkers, G., Jaspers, N.G., Hoeijmakers, J.H., Kaptein, R., Boelens, R.

(2008) Proteins 70: 1551-1563

Released	2006-10-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA repair endonuclease XPF (protein)

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2B2N \| pdb_00002b2n	Download File View File

Structure of transcription-repair coupling factor

Assenmacher, N., Wenig, K., Lammens, A., Hopfner, K.-P.

(2006) J Mol Biology 355: 675-683

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Transcription-repair coupling factor (protein)
Unique Ligands	NA, P4C, SO4

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3BKZ \| pdb_00003bkz	Download File View File

X-ray structure of E coli AlkB crosslinked to dsDNA in the active site

Yi, C., Yang, C.-G., He, C.

(2008) Nature 452: 961-965

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase alkB (protein) DNA (5'-D(DAPDAPDCPDGPDAPDTPDAPDTPDTPDAPDCPDCPDT)-3') (nucleic acid) DNA (5'-D(DTPDAPDGPDGPDTPDAPDAPDCPDAPDTPDCPDGPDT)-3') (nucleic acid)
Unique Ligands	AKG, MN

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3FHF \| pdb_00003fhf	Download File View File

Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine DNA glycosylase (MjOgg)

Faucher, F., Doublie, S.

(2009) Structure 17: 703-712

Released	2009-05-19
Method	X-RAY DIFFRACTION 1.995 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	N-glycosylase/DNA lyase (protein)

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3FHG \| pdb_00003fhg	Download File View File

Crystal structure of Sulfolobus solfataricus 8-oxoguanine DNA glycosylase (SsOgg)

Faucher, F., Doublie, S.

(2009) Structure 17: 703-712

Released	2009-05-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharolobus solfataricus
Macromolecule	N-glycosylase/DNA lyase (protein)
Unique Ligands	GOL, SO4

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BIX | pdb_00001bix

1BKN | pdb_00001bkn

1E9N | pdb_00001e9n

1EA6 | pdb_00001ea6

1H7S | pdb_00001h7s

1H7U | pdb_00001h7u

1HD7 | pdb_00001hd7

1MUN | pdb_00001mun

1MUT | pdb_00001mut

1MUY | pdb_00001muy

1QNF | pdb_00001qnf

1QNT | pdb_00001qnt

1TP4 | pdb_00001tp4

1US8 | pdb_00001us8

1W3S | pdb_00001w3s

1XPA | pdb_00001xpa

6LHS | pdb_00006lhs

6LHU | pdb_00006lhu

6LHV | pdb_00006lhv

6LHW | pdb_00006lhw

2AQ0 | pdb_00002aq0

2B2N | pdb_00002b2n

3BKZ | pdb_00003bkz

3FHF | pdb_00003fhf

3FHG | pdb_00003fhg