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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Sus scrofa domesticus"

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Sus scrofa domesticus (18)
	Homo sapiens (7)
	Human immunodeficiency virus 1 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (18)
	Riboviria (1)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (14)
	X-RAY DIFFRACTION (3)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (18)
	RNA (7)
	DNA (5)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)
	3.0 - 3.5 (4)
	3.5 - 4.0 (5)
	> 4.5 (1)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (1)
	2010 - 2014 (1)
	2020 - 2024 (12)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (11)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	All beta proteins (4)
	All alpha proteins (2)
	Small proteins (1)
	Alpha and beta proteins (a+b) (1)

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1 to 18 of 18 Structures

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1AQB \| pdb_00001aqb	Download File View File

RETINOL-BINDING PROTEIN (RBP) FROM PIG PLASMA

Zanotti, G., Panzalorto, M., Marcato, A., Malpeli, G., Folli, C., Berni, R.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1049-1052

Released	1998-01-28
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Sus scrofa domesticus
Macromolecule	RETINOL-BINDING PROTEIN (protein)
Unique Ligands	CD, RTL

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1C5A \| pdb_00001c5a	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PORCINE C5ADES*ARG FROM 1H NUCLEAR MAGNETIC RESONANCE DATA

Williamson, M.P., Madison, V.S.

(1990) Biochemistry 29: 2895-2905

Released	1991-10-15
Method	SOLUTION NMR
Organisms	Sus scrofa domesticus
Macromolecule	COMPLEMENT C5A ANAPHYLATOXIN (protein)

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1INC \| pdb_00001inc	Download File View File

CRYSTAL STRUCTURES OF THE COMPLEX OF PORCINE PANCREATIC ELASTASE WITH TWO VALINE-DERIVED BENZOXAZINONE INHIBITORS

Meyer, E.

(1987) J Mol Biology 198: 417-424

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Sus scrofa domesticus
Macromolecule	PORCINE PANCREATIC ELASTASE (protein)
Unique Ligands	CA, ICL, SO4

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1JIM \| pdb_00001jim	Download File View File

STEREOSPECIFIC REACTION OF 3-METHOXY-4-CHLORO-7-AMINOISOCOUMARIN WITH CRYSTALLINE PORCINE PANCREATIC ELASTASE

Meyer, E.

(1985) J Am Chem Soc 107: 4091

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Sus scrofa domesticus
Macromolecule	PORCINE PANCREATIC ELASTASE (protein)
Unique Ligands	ICU, SO4

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4CE4 \| pdb_00004ce4	Download File View File

39S large subunit of the porcine mitochondrial ribosome

Greber, B.J., Boehringer, D., Leitner, A., Bieri, P., Voigts-Hoffmann, F., Erzberger, J.P., Leibundgut, M., Aebersold, R., Ban, N.

(2014) Nature 505: 515

Released	2013-12-18
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Sus scrofa domesticus
Macromolecule	Unique protein chains: 35 Unique nucleic acid chains: 2
Unique Ligands	ZN

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7B0Y \| pdb_00007b0y	Download File View File

Structure of a transcribing RNA polymerase II-U1 snRNP complex

Zhang, S., Aibara, S., Vos, S.M., Agafonov, D.E., Luehrmann, R., Cramer, P.

(2021) Science 371: 305-309

Released	2021-01-13
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Sus scrofa domesticus synthetic construct
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 4
Unique Ligands	MG, ZN

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7B7U \| pdb_00007b7u	Download File View File

Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2

Fianu, I., Dienemann, C., Aibara, S., Schilbach, S., Cramer, P.

(2021) Commun Biol 4: 606-606

Released	2021-05-19
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Sus scrofa domesticus
Macromolecule	Unique protein chains: 12
Unique Ligands	ZN

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7OZN \| pdb_00007ozn	Download File View File

RNA Polymerase II dimer (Class 1)

Aibara, S., Dienemann, C., Cramer, P.

(2021) Nucleic Acids Res 49: 10747-10755

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Sus scrofa domesticus
Macromolecule	Unique protein chains: 12
Unique Ligands	ZN

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7OZO \| pdb_00007ozo	Download File View File

RNA Polymerase II dimer (Class 2)

Aibara, S., Dienemann, C., Cramer, P.

(2021) Nucleic Acids Res 49: 10747-10755

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sus scrofa domesticus
Macromolecule	Unique protein chains: 12
Unique Ligands	ZN

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7OZP \| pdb_00007ozp	Download File View File

RNA Polymerase II dimer (Class 3)

Aibara, S., Dienemann, C., Cramer, P.

(2021) Nucleic Acids Res 49: 10747-10755

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sus scrofa domesticus
Macromolecule	Unique protein chains: 12
Unique Ligands	ZN

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7PKS \| pdb_00007pks	Download File View File

Structural basis of Integrator-mediated transcription regulation

Fianu, I., Chen, Y., Dienemann, C., Cramer, P.

(2021) Science 374: 883-887

Released	2021-12-08
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Sus scrofa domesticus
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 3
Unique Ligands	MG, MN, ZN

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7PX8 \| pdb_00007px8	Download File View File

CryoEM structure of mammalian acylaminoacyl-peptidase

Kiss-Szeman, A.J., Harmat, V., Menyhard, D.K., Straner, P., Jakli, I., Hosogi, N., Perczel, A.

(2022) Chem Sci 13: 7132-7142

Released	2022-05-25
Method	ELECTRON MICROSCOPY 3.27 Å
Organisms	Sus scrofa domesticus
Macromolecule	Acylamino-acid-releasing enzyme (protein)

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7QUN \| pdb_00007qun	Download File View File

CryoEM structure of mammalian AAP in complex with Meropenem

Kiss-Szeman, A.J., Harmat, V., Straner, P., Jakli, I., Menyhard, K.D., Masiulis, S., Perczel, A.

(2022) Chem Sci 13: 14264-14276

Released	2022-11-16
Method	ELECTRON MICROSCOPY 2.1 Å
Organisms	Sus scrofa domesticus
Macromolecule	Acylamino-acid-releasing enzyme (protein)
Unique Ligands	DWZ

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8B3D \| pdb_00008b3d	Download File View File

Structure of the Pol II-TCR-ELOF1 complex.

Kokic, G., Cramer, P.

To be published

Released	2023-09-27
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens Sus scrofa domesticus
Macromolecule	Unique protein chains: 17 Unique nucleic acid chains: 3
Unique Ligands	ADP, BEF, MG, ZN

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8B3F \| pdb_00008b3f	Download File View File

Pol II-CSB-CSA-DDB1-ELOF1

Kokic, G., Cramer, P.

To be published

Released	2023-09-27
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens Sus scrofa domesticus
Macromolecule	Unique protein chains: 16 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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8QEP \| pdb_00008qep	Download File View File

RNA polymerase II bound to Alu RNA right arm

Tluckova, K., Bernecky, C.

(2025) Nat Struct Mol Biol

Released	2025-01-22
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Sus scrofa domesticus
Macromolecule	Unique protein chains: 11
Unique Ligands	ZN

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8QEQ \| pdb_00008qeq	Download File View File

RNA polymerase II bound to minimal Alu RNA right arm in the alternative conformation

Tluckova, K., Bernecky, C.

(2025) Nat Struct Mol Biol

Released	2024-12-11
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens Sus scrofa domesticus
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

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9FD2 \| pdb_00009fd2	Download File View File

Structure of Pol II-TC-NER-STK19 complex

Lee, S.-H., Sixma, T.K.

(2024) Mol Cell 84: 4740

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Sus scrofa domesticus
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AQB | pdb_00001aqb

RETINOL-BINDING PROTEIN (RBP) FROM PIG PLASMA

1C5A | pdb_00001c5a

THREE-DIMENSIONAL STRUCTURE OF PORCINE C5ADES*ARG FROM 1H NUCLEAR MAGNETIC RESONANCE DATA

1INC | pdb_00001inc

CRYSTAL STRUCTURES OF THE COMPLEX OF PORCINE PANCREATIC ELASTASE WITH TWO VALINE-DERIVED BENZOXAZINONE INHIBITORS

1JIM | pdb_00001jim

STEREOSPECIFIC REACTION OF 3-METHOXY-4-CHLORO-7-AMINOISOCOUMARIN WITH CRYSTALLINE PORCINE PANCREATIC ELASTASE

4CE4 | pdb_00004ce4

39S large subunit of the porcine mitochondrial ribosome

7B0Y | pdb_00007b0y

Structure of a transcribing RNA polymerase II-U1 snRNP complex

7B7U | pdb_00007b7u

Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2

7OZN | pdb_00007ozn

RNA Polymerase II dimer (Class 1)

7OZO | pdb_00007ozo

RNA Polymerase II dimer (Class 2)

7OZP | pdb_00007ozp

RNA Polymerase II dimer (Class 3)

7PKS | pdb_00007pks

Structural basis of Integrator-mediated transcription regulation

7PX8 | pdb_00007px8

CryoEM structure of mammalian acylaminoacyl-peptidase

7QUN | pdb_00007qun

CryoEM structure of mammalian AAP in complex with Meropenem

8B3D | pdb_00008b3d

Structure of the Pol II-TCR-ELOF1 complex.

8B3F | pdb_00008b3f

Pol II-CSB-CSA-DDB1-ELOF1

8QEP | pdb_00008qep

RNA polymerase II bound to Alu RNA right arm

8QEQ | pdb_00008qeq

RNA polymerase II bound to minimal Alu RNA right arm in the alternative conformation

9FD2 | pdb_00009fd2

Structure of Pol II-TC-NER-STK19 complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AQB | pdb_00001aqb

1C5A | pdb_00001c5a

1INC | pdb_00001inc

1JIM | pdb_00001jim

4CE4 | pdb_00004ce4

7B0Y | pdb_00007b0y

7B7U | pdb_00007b7u

7OZN | pdb_00007ozn

7OZO | pdb_00007ozo

7OZP | pdb_00007ozp

7PKS | pdb_00007pks

7PX8 | pdb_00007px8

7QUN | pdb_00007qun

8B3D | pdb_00008b3d

8B3F | pdb_00008b3f

8QEP | pdb_00008qep

8QEQ | pdb_00008qeq

9FD2 | pdb_00009fd2