1C4X

2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE (BPHD) FROM RHODOCOCCUS SP. STRAIN RHA1

PDB DOI: https://doi.org/10.2210/pdb1C4X/pdb

Classification: HYDROLASE
Organism(s): Rhodococcus jostii RHA1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 1999-09-30 Released: 1999-10-01
Deposition Author(s): Nandhagopal, N., Senda, T., Mitsui, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.227
R-Value Work: 0.178
R-Value Observed: 0.178

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Three-Dimensional Structure of Microbial 2-Hydroxyl-6-Oxo-6-Phenylhexa-2,4- Dienoic Acid (Hpda) Hydrolase (Bphd Enzyme) from Rhodococcus Sp. Strain Rha1, in the Pcb Degradation Pathway

Nandhagopal, N., Senda, T., Hatta, T., Yamada, A., Masai, E., Fukuda, M., Mitsui, Y.

(1997) Proc Jpn Acad Ser B Phys Biol Sci 73: 154

Macromolecule Content

Total Structure Weight: 31.68 kDa
Atom Count: 2,231
Modelled Residue Count: 281
Deposited Residue Count: 285
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE)	A	285	Rhodococcus jostii RHA1	Mutation(s): 0 EC: 3.7.1.8
UniProt
Find proteins for Q75WN8 (Rhodococcus jostii (strain RHA1)) Explore Q75WN8 Go to UniProtKB: Q75WN8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q75WN8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.227
R-Value Work: 0.178
R-Value Observed: 0.178
Space Group: I 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.8	α = 90
b = 110.8	β = 90
c = 136.4	γ = 90

Software Package:

Software Name	Purpose
CCP4	model building
X-PLOR	refinement
PROCESS	data reduction
PROCESS	data scaling
CCP4	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 1999-10-01

Deposition Author(s):

Nandhagopal, N.

Revision History (Full details and data files)

Version 1.0: 1999-10-01
Type: Initial release
Version 1.1: 2008-04-26
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2019-12-11
Changes: Derived calculations
Version 1.4: 2023-12-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.