1FBI

CRYSTAL STRUCTURE OF A CROSS-REACTION COMPLEX BETWEEN FAB F9.13.7 AND GUINEA-FOWL LYSOZYME


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Work: 0.190 
  • R-Value Observed: 0.190 

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This is version 1.4 of the entry. See complete history


Literature

Crystal structure of a cross-reaction complex between Fab F9.13.7 and guinea fowl lysozyme.

Lescar, J.Pellegrini, M.Souchon, H.Tello, D.Poljak, R.J.Peterson, N.Greene, M.Alzari, P.M.

(1995) J Biol Chem 270: 18067-18076

  • DOI: https://doi.org/10.1074/jbc.270.30.18067
  • Primary Citation of Related Structures:  
    1FBI

  • PubMed Abstract: 

    The crystal structure of the complex between the cross-reacting antigen Guinea fowl lysozyme and the Fab from monoclonal antibody F9.13.7, raised against hen egg lysozyme, has been determined by x-ray diffraction to 3-A resolution. The antibody interacts with exposed residues of an alpha-helix and surrounding loops adjacent to the lysozyme active site cleft. The epitope of lysozyme bound by antibody F9.13.7 overlaps almost completely with that bound by antibody HyHEL10; the same 12 residues of the antigen interact with the two antibodies. The antibodies, however, have different combining sites with no sequence homology at any of their complementarity-determining regions and show a dissimilar pattern of cross-reactivity with heterologous antigens. Side chain mobility of epitope residues contributes to confer steric and electrostatic complementarity to differently shaped combining sites, allowing functional mimicry to occur. The capacity of two antibodies that have different fine specificities to bind the same area of the antigen emphasizes the operational character of the definition of an antigenic determinant. This example demonstrates that degenerate binding of the same structural motif does not require the existence of sequence homology or other chemical similarities between the different binding sites.


  • Organizational Affiliation

    Unité d'Immunologie Structurale, Institut Pasteur, Paris, France.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
IGG1 F9.13.7 FAB (LIGHT CHAIN)A [auth L],
D [auth P]
214Mus musculusMutation(s): 0 
UniProt
Find proteins for P01837 (Mus musculus)
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Go to UniProtKB:  P01837
Entity Groups  
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UniProt GroupP01837
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
IGG1 F9.13.7 FAB (HEAVY CHAIN)B [auth H],
E [auth Q]
221Mus musculusMutation(s): 0 
UniProt
Find proteins for P01868 (Mus musculus)
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Go to UniProtKB:  P01868
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UniProt GroupP01868
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
GUINEA FOWL LYSOZYMEC [auth X],
F [auth Y]
129Numida meleagrisMutation(s): 0 
EC: 3.2.1.17
UniProt
Find proteins for P00704 (Numida meleagris)
Explore P00704 
Go to UniProtKB:  P00704
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UniProt GroupP00704
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Work: 0.190 
  • R-Value Observed: 0.190 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.7α = 90
b = 195.5β = 108.5
c = 50.2γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1995-02-27
    Type: Initial release
  • Version 1.1: 2008-03-21
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-06-05
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-11-20
    Changes: Structure summary