2BO1

Crystal structure of a hybrid ribosomal protein L30e with surface residues from T. celer, and core residues from yeast

• PDB DOI: https://doi.org/10.2210/pdb2BO1/pdb

• Classification: RIBOSOMAL PROTEIN
• Organism(s): Thermococcus celer
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2005-04-07 Released: 2006-08-23 
• Deposition Author(s): Lee, C.F., Cha, S.S., Lee, H.S., Wong, K.B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.240 
• R-Value Work: 0.173 
• R-Value Observed: 0.176 

Starting Model: experimental

Literature

Contribution of Hydrophobic Core and Electrostatic Surface to the Thermodyanmic Stability of Ribosomal Protein L30E

Lee, C.F., Cha, S.S., Lee, H.S., Wong, K.B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 11.2 kDa 
• Atom Count: 914 
• Modelled Residue Count: 101 
• Deposited Residue Count: 101 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S RIBOSOMAL PROTEIN L30E	A	101	Thermococcus celer	Mutation(s): 28
UniProt
Find proteins for P29160 (Thermococcus celer) Explore P29160  Go to UniProtKB:  P29160

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.240 
• R-Value Work: 0.173 
• R-Value Observed: 0.176 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.187	α = 90
b = 52.531	β = 90
c = 52.692	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
DENZO	data reduction
HKL-2000	data scaling
SCALEPACK	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-08-23 
Deposition Author(s): Lee, C.F., Cha, S.S., Lee, H.S., Wong, K.B.

Revision History  

• Version 1.0: 2006-08-23
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-13
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description