2CHQ | pdb_00002chq

Replication Factor C ADPNP complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 
    0.324 (Depositor), 0.320 (DCC) 
  • R-Value Work: 
    0.297 (Depositor), 0.290 (DCC) 
  • R-Value Observed: 
    0.299 (Depositor) 

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Ligand Structure Quality Assessment 

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This is version 1.2 of the entry. See complete history


Literature

Communication between Subunits within an Archaeal Clamp-Loader Complex.

Seybert, A.Singleton, M.R.Cook, N.Hall, D.R.Wigley, D.B.

(2006) EMBO J 25: 2209

  • DOI: https://doi.org/10.1038/sj.emboj.7601093
  • Primary Citation of Related Structures:  
    2CHG, 2CHQ, 2CHV

  • PubMed Abstract: 

    We have investigated the communication between subunits in replication factor C (RFC) from Archaeoglobus fulgidus. Mutation of the proposed arginine finger in the small subunits results in a complex that can still bind ATP but has impaired clamp-loading activity, a process that normally only requires binding of nucleotide. The small subunit alone forms a hexameric ring that is six-fold symmetric in the absence of ATP. However, this symmetry is broken when the nucleotide is bound to the complex. A conformational change associated with nucleotide binding may relate to the opening of PCNA rings by RFC during the loading reaction. The structures also reveal the importance of the N-terminal helix of each subunit at the ATP-binding site. Analysis of mutant protein complexes containing subunits lacking this N-terminal helix reveals key distinct regulatory roles during clamp loading that are different for the large and small subunits in the RFC complex.


  • Organizational Affiliation

    Clare Hall Laboratories, Cancer Research UK, London Research Institute, South Mimms Potters Bar, Herts, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
REPLICATION FACTOR C SMALL SUBUNIT
A, B, C
319Archaeoglobus fulgidusMutation(s): 0 
UniProt
Find proteins for O28219 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16))
Explore O28219 
Go to UniProtKB:  O28219
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO28219
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free:  0.324 (Depositor), 0.320 (DCC) 
  • R-Value Work:  0.297 (Depositor), 0.290 (DCC) 
  • R-Value Observed: 0.299 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.169α = 90
b = 109.169β = 90
c = 257.068γ = 120
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ANPClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-06-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references, Derived calculations, Other, Refinement description