3NCM | pdb_00003ncm

NEURAL CELL ADHESION MOLECULE, MODULE 2, NMR, 20 STRUCTURES

• PDB DOI: https://doi.org/10.2210/pdb3NCM/pdb
• BMRB: 4143

• Classification: CELL ADHESION PROTEIN
• Organism(s): Rattus norvegicus
• Expression System: Komagataella pastoris
• Mutation(s): No 


• Deposited: 1998-09-21 Released: 1999-07-23 
• Deposition Author(s): Jensen, P.H., Soroka, V., Thomsen, N.K., Berezin, V., Bock, E., Poulsen, F.M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: LEAST RESTRAINT VIOLATION 

Literature

Structure and interactions of NCAM modules 1 and 2, basic elements in neural cell adhesion

Jensen, P.H., Soroka, V., Thomsen, N.K., Ralets, I., Berezin, V., Bock, E., Poulsen, F.M.

(1999) Nat Struct Biol 6: 486-493

• PubMed: 10331878 
• DOI: https://doi.org/10.1038/8292
• Primary Citation of Related Structures:  
  3NCM


• PubMed Abstract: 
  

  The structure in solution of the second Ig-module fragment of residues 117-208 of NCAM has been determined. Like the first Ig-module of residues 20-116, it belongs to the I set of the immunogloblin superfamily. Module 1 and module 2 interact weakly, and the binding sites of this interaction have been identified. The two-module fragment NCAM(20-208) is a stable dimer. Removal of the charged residues in these sites in NCAM(20-208) abolishes the dimerization. Modeling the dimer of NCAM(20-208) to fit the interactions of these charges produces one coherent binding site for the formation of two antiparallel strands of the first two NCAM modules. This mode of binding could be a major element in trans-cellular interactions in neural cell adhesion.

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Organizational Affiliation: 

Department of Chemistry, Carlsberg Laboratory, Valby, Denmark.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 10.58 kDa 
• Atom Count: 744 
• Modelled Residue Count: 92 
• Deposited Residue Count: 92 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (NEURAL CELL ADHESION MOLECULE, LARGE ISOFORM)	A	92	Rattus norvegicus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P13595 (Mus musculus) Explore P13595  Go to UniProtKB:  P13595
IMPC:  MGI:97281

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: LEAST RESTRAINT VIOLATION 

Structure Validation

Entry History 

Deposition Data

• Released Date: 1999-07-23 
Deposition Author(s): Jensen, P.H., Soroka, V., Thomsen, N.K., Berezin, V., Bock, E., Poulsen, F.M.

Revision History  

• Version 1.0: 1999-07-23
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-11-29
  Changes: Derived calculations
• Version 1.4: 2023-12-27
  Changes: Data collection, Database references
• Version 1.5: 2024-11-06
  Changes: Structure summary