5IE3

Crystal structure of a plant enzyme

PDB DOI: https://doi.org/10.2210/pdb5IE3/pdb

Classification: LIGASE
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-02-24 Released: 2016-12-07
Deposition Author(s): Fan, M.R., Li, M., Chang, W.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.206
R-Value Work: 0.160
R-Value Observed: 0.161

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structures of Arabidopsis thaliana Oxalyl-CoA Synthetase Essential for Oxalate Degradation

Fan, M., Xiao, Y., Li, M., Chang, W.

(2016) Mol Plant 9: 1349-1352

PubMed: 27326693 Search on PubMed
DOI: https://doi.org/10.1016/j.molp.2016.06.002
Primary Citation of Related Structures:
5IE0, 5IE2, 5IE3

Organizational Affiliation

National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 15th Datun Road, Chaoyang District, Beijing 100101, People's Republic of China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing, 100049, People's Republic of China.

Macromolecule Content

Total Structure Weight: 112.1 kDa
Atom Count: 8,972
Modelled Residue Count: 1,008
Deposited Residue Count: 1,028
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxalate--CoA ligase	A, B	514	Arabidopsis thaliana	Mutation(s): 0 Gene Names: AAE3, 4CLL10, AMPBP3, At3g48990, T2J13.170 EC: 6.2.1.8
UniProt
Find proteins for Q9SMT7 (Arabidopsis thaliana) Explore Q9SMT7 Go to UniProtKB: Q9SMT7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9SMT7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AMP Query on AMP Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B] mmCIF format, chain C [auth A] mmCIF format, chain E [auth B]	C [auth A], E [auth B]	ADENOSINE MONOPHOSPHATE C₁₀ H₁₄ N₅ O₇ P UDMBCSSLTHHNCD-KQYNXXCUSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
OXD Query on OXD Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B]	D [auth A], F [auth B]	OXALIC ACID C₂ H₂ O₄ MUBZPKHOEPUJKR-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]