Download MendeleyCrystal structures of anti-T4 Fab fragment
Parkkinen, T., Rouvinen, J.To be published.
5MHE
Crystal structure of anti-T4 Fab fragment with T4
- PDB DOI: https://doi.org/10.2210/pdb5MHE/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-11-24 Released: 2018-08-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.227
- R-Value Work: 0.178
- R-Value Observed: 0.181
Starting Model: experimental
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This is version 2.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab-fragment | A [auth L] | 213 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab-fragment | B [auth H] | 235 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| T44 Query on T44 | D [auth H] | 3,5,3',5'-TETRAIODO-L-THYRONINE C15 H11 I4 N O4 XUIIKFGFIJCVMT-LBPRGKRZSA-N |  | ||
| SO4 Query on SO4 | C [auth L] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | E [auth H], F [auth H] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.227
- R-Value Work: 0.178
- R-Value Observed: 0.181
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 131.73 | α = 90 |
| b = 55.33 | β = 97.77 |
| c = 61.16 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-08-08 Deposition Author(s): Parkkinen, T., Rouvinen, J.
Revision History (Full details and data files)
- Version 1.0: 2018-08-08
Type: Initial release - Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Database references - Version 2.1: 2024-01-17
Changes: Refinement description
