7B61

Crystal structure of MurE from E.coli in complex with Z57299526


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
A, B
496Escherichia coli K-12Mutation(s): 0 
Gene Names: murEb0085JW0083
EC: 6.3.2.13
UniProt
Find proteins for P22188 (Escherichia coli (strain K12))
Explore P22188 
Go to UniProtKB:  P22188
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22188
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
T3Z
Query on T3Z

Download Ideal Coordinates CCD File 
E [auth A],
H [auth B]
(R)-N-(1-cyclopropylethyl)-6-methylpicolinamide
C12 H16 N2 O
HZPLHNFJXLSHCY-SECBINFHSA-N
SYQ (Subject of Investigation/LOI)
Query on SYQ

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D [auth A],
K [auth B]
(S)-N-(1-cyclopropylethyl)-6-methylpicolinamide
C12 H16 N2 O
HZPLHNFJXLSHCY-VIFPVBQESA-N
CIT
Query on CIT

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C [auth A],
I [auth B]
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
DMS
Query on DMS

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J [auth B]DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
IPA
Query on IPA

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F [auth A],
G [auth A],
L [auth B],
M [auth B]
ISOPROPYL ALCOHOL
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.15α = 96.93
b = 58.24β = 91.27
c = 74.03γ = 105.2
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2021-01-13
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Database references, Refinement description