7B6K

Crystal structure of MurE from E.coli in complex with Z57715447


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.206 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase
A, B
496Escherichia coli K-12Mutation(s): 0 
Gene Names: murEb0085JW0083
EC: 6.3.2.13
UniProt
Find proteins for P22188 (Escherichia coli (strain K12))
Explore P22188 
Go to UniProtKB:  P22188
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22188
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SZ2 (Subject of Investigation/LOI)
Query on SZ2

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E [auth A],
G [auth B]
5-cyclohexyl-3-(pyridin-4-yl)-1,2,4-oxadiazole
C13 H15 N3 O
XXTHMVRJMJIERU-UHFFFAOYSA-N
CIT
Query on CIT

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F [auth A],
I [auth B]
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
DMS
Query on DMS

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C [auth A],
H [auth B]
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
IPA
Query on IPA

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D [auth A]ISOPROPYL ALCOHOL
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.206 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.693α = 97.098
b = 58.903β = 91.201
c = 74.011γ = 104.598
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-23
    Type: Initial release
  • Version 1.1: 2020-12-30
    Changes: Database references, Structure summary
  • Version 1.2: 2024-01-31
    Changes: Data collection, Database references, Derived calculations, Refinement description