7N69

Pre-fusion state 2 of EEEV with localized reconstruction


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 14.1 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structures of alphavirus conformational intermediates in low pH-triggered prefusion states.

Chen, C.L.Klose, T.Sun, C.Kim, A.S.Buda, G.Rossmann, M.G.Diamond, M.S.Klimstra, W.B.Kuhn, R.J.

(2022) Proc Natl Acad Sci U S A 119: e2114119119-e2114119119

  • DOI: https://doi.org/10.1073/pnas.2114119119
  • Primary Citation of Related Structures:  
    7N69, 7N6A

  • PubMed Abstract: 

    Alphaviruses can cause severe human arthritis and encephalitis. During virus infection, structural changes of viral glycoproteins in the acidified endosome trigger virus-host membrane fusion for delivery of the capsid core and RNA genome into the cytosol to initiate virus translation and replication. However, mechanisms by which E1 and E2 glycoproteins rearrange in this process remain unknown. Here, we investigate prefusion cryoelectron microscopy (cryo-EM) structures of eastern equine encephalitis virus (EEEV) under acidic conditions. With models fitted into the low-pH cryo-EM maps, we suggest that E2 dissociates from E1, accompanied by a rotation (∼60°) of the E2-B domain (E2-B) to expose E1 fusion loops. Cryo-EM reconstructions of EEEV bound to a protective antibody at acidic and neutral pH suggest that stabilization of E2-B prevents dissociation of E2 from E1. These findings reveal conformational changes of the glycoprotein spikes in the acidified host endosome. Stabilization of E2-B may provide a strategy for antiviral agent development.


  • Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Spike glycoprotein E1
A, C, E, G, I
A, C, E, G, I, K
441Eastern equine encephalitis virus (strain Florida 91-469)Mutation(s): 0 
UniProt
Find proteins for Q4QXJ7 (Eastern equine encephalitis virus (strain Florida 91-469))
Explore Q4QXJ7 
Go to UniProtKB:  Q4QXJ7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4QXJ7
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Spike glycoprotein E2
B, D, F, H, J
B, D, F, H, J, L
420Eastern equine encephalitis virus (strain Florida 91-469)Mutation(s): 0 
UniProt
Find proteins for Q4QXJ7 (Eastern equine encephalitis virus (strain Florida 91-469))
Explore Q4QXJ7 
Go to UniProtKB:  Q4QXJ7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4QXJ7
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 14.1 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcisTEM
MODEL REFINEMENTMDFF

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI095366
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI142790
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI095436
Defense Threat Reduction Agency (DTRA)United StatesHDTRA1-15-1-0047
Defense Threat Reduction Agency (DTRA)United StatesHDTRA1-15-1-0013

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-22
    Type: Initial release
  • Version 1.1: 2022-08-03
    Changes: Database references