8HW5 | pdb_00008hw5

Crystal structure of African swine fever virus CP312R

• PDB DOI: https://doi.org/10.2210/pdb8HW5/pdb

• Classification: VIRAL PROTEIN
• Organism(s): African swine fever virus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-12-29 Released: 2024-01-17 
• Deposition Author(s): Wang, W.M., Wang, Z.Y., Fu, D., Guo, Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.238 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.186 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.191 (Depositor) 

Starting Model: in silico

Literature

African swine fever virus CP312R is essential for virus replication and inhibits host protein expression by interacting with RPS27A

Hagoss, Y.T., Shen, D.D., Wang, W.M., Guo, Y., Bu, Z.G., Zhao, D.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 31.78 kDa 
• Atom Count: 2,246 
• Modelled Residue Count: 260 
• Deposited Residue Count: 279 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CP312R	A	279	African swine fever virus	Mutation(s): 0  Gene Names: CP312R CDS, CP312R, ASFV-Georgia_4-120
UniProt
Find proteins for A0A2X0RVH4 (African swine fever virus) Explore A0A2X0RVH4  Go to UniProtKB:  A0A2X0RVH4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ACY (Subject of Investigation/LOI)	B [auth A], C [auth A], D [auth A], E [auth A]	ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.238 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.186 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.191 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.993	α = 90
b = 79.799	β = 118.77
c = 47.545	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
HKL-2000	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-17 
Deposition Author(s): Wang, W.M., Wang, Z.Y., Fu, D., Guo, Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31941011

Revision History  

• Version 1.0: 2024-01-17
  Type: Initial release