8QCN

E.coli IspE in complex with a ligand (2)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.229 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ADPClick on this verticalbar to view detailsBest fitted QB9Click on this verticalbar to view details

This is version 1.0 of the entry. See complete history


Literature

E.coli IspE in complex with a ligand (2)

Hamid, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
A, B
283Escherichia coliMutation(s): 0 
Gene Names: ispE
EC: 2.7.1.148
UniProt
Find proteins for P62615 (Escherichia coli (strain K12))
Explore P62615 
Go to UniProtKB:  P62615
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62615
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.229 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 143.928α = 90
b = 53.113β = 127.39
c = 91.717γ = 90
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ADPClick on this verticalbar to view detailsBest fitted QB9Click on this verticalbar to view details

Entry History & Funding Information

Deposition Data

  • Released Date: 2024-09-11 
  • Deposition Author(s): Hamid, R.

Funding OrganizationLocationGrant Number
Helmholtz AssociationGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-11
    Type: Initial release