8VJG

Human R14A Pin1 covalently bound to inhibitor 164A10

• PDB DOI: https://doi.org/10.2210/pdb8VJG/pdb

• Classification: ISOMERASE/INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): Yes 


• Deposited: 2024-01-06 Released: 2024-11-06 
• Deposition Author(s): Rodriguez, I., Blaha, G.
• Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS), National Institutes of Health/National Cancer Institute (NIH/NCI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.58 Å
• R-Value Free: 0.229 
• R-Value Work: 0.203 
• R-Value Observed: 0.204 

Starting Model: experimental

Literature

Targeted Degradation of Pin1 by Protein Destabilizing Compounds

Alboreggia, G., Udompholkul, P., Rodriguez, I., Baggio, C., Blaha, G., Pellecchia, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 20 kDa 
• Atom Count: 1,401 
• Modelled Residue Count: 145 
• Deposited Residue Count: 166 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	A	166	Homo sapiens	Mutation(s): 1  Gene Names: PIN1 EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for Q13526 (Homo sapiens) Explore Q13526  Go to UniProtKB:  Q13526
PHAROS:  Q13526 GTEx:  ENSG00000127445

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1ACH (Subject of Investigation/LOI)	B [auth A]	Nalpha-{(2S)-1-[(3S)-2-acetyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carbonyl]piperidine-2-carbonyl}-5-fluoro-L-tryptophanamide C31 H33 F N6 O4 VWCVSCYVDCSUOY-MYKRZTLLSA-N
P33	C [auth A]	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N
DTT	D [auth A]	2,3-DIHYDROXY-1,4-DITHIOBUTANE C4 H10 O2 S2 VHJLVAABSRFDPM-IMJSIDKUSA-N
SO4	E [auth A], F [auth A], G [auth A], H [auth A], I [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.58 Å
• R-Value Free: 0.229 
• R-Value Work: 0.203 
• R-Value Observed: 0.204 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.827	α = 90
b = 68.827	β = 90
c = 79.251	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
BOS	data collection
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-06 
Deposition Author(s): Rodriguez, I., Blaha, G.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	NS107479
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	CA168517
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	CA285114

Revision History  

• Version 1.0: 2024-11-06
  Type: Initial release