Parkin in complex with phospho NEDD8
Lenka, D.R., Kumar, A.(null) Structure 
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase parkin | 325 | Homo sapiens | Mutation(s): 1  Gene Names: PRKN | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60260 (Homo sapiens) Explore O60260  Go to UniProtKB:  O60260 | |||||
PHAROS:  O60260 GTEx:  ENSG00000185345  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60260 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NEDD8 | 77 | Homo sapiens | Mutation(s): 0  Gene Names: NEDD8 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15843 (Homo sapiens) Explore Q15843  Go to UniProtKB:  Q15843 | |||||
PHAROS:  Q15843 GTEx:  ENSG00000129559  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15843 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG Query on PEG | K [auth A], L [auth A], M [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ZN Query on ZN | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | B | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 58.249 | α = 90 |
b = 74.603 | β = 90 |
c = 80.067 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
autoPROC | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Department of Biotechnology (DBT, India) | India | -- |