8YTQ

The structure of apoCopC from Thioalkalivibrio paradoxus

• PDB DOI: https://doi.org/10.2210/pdb8YTQ/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Thioalkalivibrio paradoxus ARh 1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-03-26 Released: 2024-04-24 
• Deposition Author(s): Kulikova, O.G., Solovieva, A.Y., Varfolomeeva, L.A., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.231 
• R-Value Work: 0.184 
• R-Value Observed: 0.186 

Literature

The structure of apoCopC from Thioalkalivibrio paradoxus

Kulikova, O.G., Solovieva, A.Y., Varfolomeeva, L.A., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 56.65 kDa 
• Atom Count: 4,055 
• Modelled Residue Count: 509 
• Deposited Residue Count: 520 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CopC domain-containing protein	A, B, C, D	130	Thioalkalivibrio paradoxus ARh 1	Mutation(s): 0  Gene Names: THITH_13340
UniProt
Find proteins for W0DSL1 (Thioalkalivibrio paradoxus ARh 1) Explore W0DSL1  Go to UniProtKB:  W0DSL1

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	G [auth B], J [auth D]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
CU (Subject of Investigation/LOI)	E [auth A], I [auth C], K [auth D]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N
ACT	F [auth B], H [auth C]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.231 
• R-Value Work: 0.184 
• R-Value Observed: 0.186 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.084	α = 90
b = 144.787	β = 90.07
c = 55.35	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
DIALS	data reduction
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-24 
Deposition Author(s): Kulikova, O.G., Solovieva, A.Y., Varfolomeeva, L.A., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-04-24
  Type: Initial release