Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPeptide deformylase 8033706 3001229 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPeptide deformylase 8033706 3001229 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPeptide deformylase 8033706 3001229 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APep_deformylasee1bszA1 A: a+b complex topologyX: Peptide deformylase (From Topology)H: Peptide deformylase (From Topology)T: Peptide deformylaseF: Pep_deformylaseECOD (1.6)
BPep_deformylasee1bszB1 A: a+b complex topologyX: Peptide deformylase (From Topology)H: Peptide deformylase (From Topology)T: Peptide deformylaseF: Pep_deformylaseECOD (1.6)
CPep_deformylasee1bszC1 A: a+b complex topologyX: Peptide deformylase (From Topology)H: Peptide deformylase (From Topology)T: Peptide deformylaseF: Pep_deformylaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylaseCATH (4.3.0)
B3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylaseCATH (4.3.0)
C3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF01327Polypeptide deformylase (Pep_deformylase)Polypeptide deformylase- Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR023635Peptide deformylaseFamily
A, B, C
IPR036821Peptide deformylase superfamilyHomologous Superfamily

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
peptide deformylase  M-CSA #98

In prokaryotes, proteins are synthesised with an N-terminal formylmethionine which is removed by peptide deformylase. Eukaryotes do not use this enzyme, so it represents a potential drug target for the treatment of bacterial infections.

Defined by 7 residues: GLY:C-45 [auth C-1045]GLN:C-50 [auth C-1050]CYS:C-90 [auth C-1090]LEU:C-91 [auth C-1091]HIS:C-132 [auth C-1132]GLU:C-133 [auth C-1133]HIS:C-136 [auth C-1136]
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Explore in 3DM-CSA Motif Definition