1IDT
STRUCTURAL STUDIES ON A PRODRUG-ACTIVATING SYSTEM-CB1954 AND FMN-DEPENDENT NITROREDUCTASE
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1idta_ | Alpha and beta proteins (a+b) | FMN-dependent nitroreductase-like | FMN-dependent nitroreductase-like | NADH oxidase/flavin reductase | Oxygen-insensitive NAD(P)H nitroreductase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1idtb_ | Alpha and beta proteins (a+b) | FMN-dependent nitroreductase-like | FMN-dependent nitroreductase-like | NADH oxidase/flavin reductase | Oxygen-insensitive NAD(P)H nitroreductase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Nitroreductase | e1idtA1 | A: a+b two layers | X: Alpha-beta plaits | H: FMN-dependent nitroreductase-like (From Topology) | T: FMN-dependent nitroreductase-like | F: Nitroreductase | ECOD (1.6) |
B | Nitroreductase | e1idtB1 | A: a+b two layers | X: Alpha-beta plaits | H: FMN-dependent nitroreductase-like (From Topology) | T: FMN-dependent nitroreductase-like | F: Nitroreductase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.109.10 | Alpha Beta | 3-Layer(aba) Sandwich | NADH Oxidase | NADH Oxidase | CATH (4.3.0) |
B | 3.40.109.10 | Alpha Beta | 3-Layer(aba) Sandwich | NADH Oxidase | NADH Oxidase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00881 | Nitroreductase family (Nitroreductase) | Nitroreductase family | The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029479 | Nitroreductase | Domain | |
IPR033878 | Oxygen-insensitive NAD(P)H nitroreductase NfsB-like | Domain | |
IPR050627 | Nitroreductase/BluB | Family | |
IPR000415 | Nitroreductase-like | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
oxygen insensitive NAD(P)H nitroreductase M-CSA #211 | Nitroreductase (NTR) isolated from Escherichia coli catalyses the reduction of nitroaromatics, such as nitrofurazone and nitrofurantoin, to hydroxylamines and quinones, such as menadione, to quinols and has potential uses in chemotherapy and bioremediation. Unusually, it can use either NADPH or NADH as the reducing agent. The enzyme is oxygen-insensitive in that it does not transfers electrons to oxygen to produce superoxide. NTR is part of a family of FMN-containing oxidoreductases that have broadly similar substrate specificities. These enzymes are dimeric and contain two active sites, catalysing nitroaromatic reduction via a ping-pong bi bi mechanism. The substrate binds over the pyrimidine and central rings of the flavin. A portion of helix H6 can flex to accommodate the differently sized inhibitors suggesting a mechanism for accommodating varied substrates. This enzyme was first isolated from bacteria growing in a weapons storage dump, and can reduce trinitrotoluene. | EC: 1.6.99.7 (PDB Primary Data) EC: 1 (UniProt) EC: 1.5.1.34 (UniProt) |