1P9H | pdb_00001p9h

CRYSTAL STRUCTURE OF THE COLLAGEN-BINDING DOMAIN OF YERSINIA ADHESIN YadA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1p9ha_	All beta proteins	Single-stranded left-handed beta-helix	Adhesin YadA, collagen-binding domain	Adhesin YadA, collagen-binding domain	Adhesin YadA, collagen-binding domain	(Yersinia enterocolitica ) [TaxId: 630 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Adhesin YadA, collagen-binding domain	8026074	4000961	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Adhesin YadA, collagen-binding domain	8038453	3000252	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YadA_head	e1p9hA2	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Adhesin YadA, collagen-binding domain (From Topology)	T: Adhesin YadA, collagen-binding domain	F: YadA_head	ECOD (1.6)
A	YadA_stalk	e1p9hA3	A: beta duplicates or obligate multimers	X: Trimeric autotransporter adhesin GIN domain (From Topology)	H: Trimeric autotransporter adhesin GIN domain (From Topology)	T: Trimeric autotransporter adhesin GIN domain	F: YadA_stalk	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05662	Coiled stalk of trimeric autotransporter adhesin (YadA_stalk)	Coiled stalk of trimeric autotransporter adhesin	-	Motif
A	PF05658	YadA head domain repeat (2 copies) (YadA_head)	YadA head domain repeat (2 copies)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Invasin	collagen binding protein-containing complex binding binding	cell adhesion cellular process protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region protein secretion by the type V secretion system transmembrane transport cell adhesion cellular process protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region protein secretion by the type V secretion system transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization intracellular protein localization	cell surface cellular anatomical structure cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008635	Trimeric autotransporter adhesin YadA-like, stalk domain	Domain
A	IPR008640	Trimeric autotransporter adhesin YadA-like, head domain	Domain
A	IPR005594	Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domain	Domain
A	IPR008126	Outer membrane adhesion, Yersinia	Family
A	IPR011049	Serralysin-like metalloprotease, C-terminal	Homologous Superfamily
A	IPR045584	Pilin-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.