1TZ9 | pdb_00001tz9

Crystal Structure of the Putative Mannonate Dehydratase from Enterococcus faecalis, Northeast Structural Genomics Target EfR41

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1tz9a1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Xylose isomerase-like	UxuA-like	Mannonate dehydratase UxuA	(Enterococcus faecalis V583 ) [TaxId: 226185 ],	SCOPe (2.08)
A	d1tz9a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Enterococcus faecalis V583 ) [TaxId: 226185 ],	SCOPe (2.08)
B	d1tz9b1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Xylose isomerase-like	UxuA-like	Mannonate dehydratase UxuA	(Enterococcus faecalis V583 ) [TaxId: 226185 ],	SCOPe (2.08)
B	d1tz9b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Enterococcus faecalis V583 ) [TaxId: 226185 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	UxuA-like	8028164	4001951	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Xylose isomerase-like	8040543	3000560	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Xylose isomerase-like	8040543	3000560	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UxuA	e1tz9A1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: UxuA	ECOD (1.6)
B	UxuA	e1tz9B1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: UxuA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.150	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Divalent-metal-dependent TIM barrel enzymes	CATH (4.3.0)
B	3.20.20.150	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Divalent-metal-dependent TIM barrel enzymes	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03786	D-mannonate dehydratase (UxuA) (UxuA)	D-mannonate dehydratase (UxuA)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Mannonate dehydratase	cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding iron ion binding ferrous iron binding mannonate dehydratase activity hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity	catabolic process oxoacid metabolic process uronic acid metabolic process carboxylic acid metabolic process organic acid metabolic process organic acid catabolic process monocarboxylic acid catabolic process D-glucuronate catabolic process glucuronate metabolic process carboxylic acid catabolic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process catabolic process oxoacid metabolic process uronic acid metabolic process carboxylic acid metabolic process organic acid metabolic process organic acid catabolic process monocarboxylic acid catabolic process D-glucuronate catabolic process glucuronate metabolic process carboxylic acid catabolic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process small molecule catabolic process D-glucuronate metabolic process glucuronate catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004628	Mannonate dehydratase	Family
A, B	IPR036237	Xylose isomerase-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.