Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1xhxa1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Exonuclease domain of phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Ad1xhxa2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Bd1xhxb1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Exonuclease domain of phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Bd1xhxb2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Cd1xhxc1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Exonuclease domain of phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Cd1xhxc2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Dd1xhxd1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Exonuclease domain of phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Dd1xhxd2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I phi29 DNA polymerase (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like 8036151 3001272 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRibonuclease H-like 8036150 3000143 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like 8036151 3001272 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibonuclease H-like 8036150 3000143 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like 8036151 3001272 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibonuclease H-like 8036150 3000143 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibonuclease H-like 8036150 3000143 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like 8036151 3001272 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADNA_pol_B_2_3rde1xhxA1 A: alpha bundlesX: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)T: fingers domain in bacteriophage RB69-like DNA polymerase IF: DNA_pol_B_2_3rdECOD (1.6)
APHA02563e1xhxA2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PHA02563ECOD (1.6)
ADNA_pol_B_2_2nde1xhxA3 A: a+b complex topologyX: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)H: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)T: insertion domain in bacteriophage phi29 DNA polymeraseF: DNA_pol_B_2_2ndECOD (1.6)
ADNA_pol_B_2_1ste1xhxA4 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DNA_pol_B_2_1stECOD (1.6)
BDNA_pol_B_2_3rde1xhxB1 A: alpha bundlesX: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)T: fingers domain in bacteriophage RB69-like DNA polymerase IF: DNA_pol_B_2_3rdECOD (1.6)
BPHA02563e1xhxB2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PHA02563ECOD (1.6)
BDNA_pol_B_2_2nde1xhxB3 A: a+b complex topologyX: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)H: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)T: insertion domain in bacteriophage phi29 DNA polymeraseF: DNA_pol_B_2_2ndECOD (1.6)
BDNA_pol_B_2_1ste1xhxB4 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DNA_pol_B_2_1stECOD (1.6)
CDNA_pol_B_2_3rde1xhxC1 A: alpha bundlesX: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)T: fingers domain in bacteriophage RB69-like DNA polymerase IF: DNA_pol_B_2_3rdECOD (1.6)
CPHA02563e1xhxC2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PHA02563ECOD (1.6)
CDNA_pol_B_2_2nde1xhxC3 A: a+b complex topologyX: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)H: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)T: insertion domain in bacteriophage phi29 DNA polymeraseF: DNA_pol_B_2_2ndECOD (1.6)
CDNA_pol_B_2_1ste1xhxC4 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DNA_pol_B_2_1stECOD (1.6)
DDNA_pol_B_2_3rde1xhxD1 A: alpha bundlesX: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology)T: fingers domain in bacteriophage RB69-like DNA polymerase IF: DNA_pol_B_2_3rdECOD (1.6)
DPHA02563e1xhxD2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PHA02563ECOD (1.6)
DDNA_pol_B_2_2nde1xhxD3 A: a+b complex topologyX: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)H: insertion domain in bacteriophage phi29 DNA polymerase (From Topology)T: insertion domain in bacteriophage phi29 DNA polymeraseF: DNA_pol_B_2_2ndECOD (1.6)
DDNA_pol_B_2_1ste1xhxD4 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DNA_pol_B_2_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
A3.90.1600.10 Alpha Beta Alpha-Beta Complex Palm domain of DNA polymerase B family DNA polymerase, palm domainCATH (4.3.0)
A3.30.1770.10 Alpha Beta 2-Layer Sandwich TPR 1 domain of DNA polymerase TPR 1 domain of DNA polymeraseCATH (4.3.0)
A1.10.287.690 Mainly Alpha Orthogonal Bundle Helix Hairpins B family DNA polymerase, finger domainCATH (4.3.0)
A4.10.80.20 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)
A4.10.80.30 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)
B3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
B3.90.1600.10 Alpha Beta Alpha-Beta Complex Palm domain of DNA polymerase B family DNA polymerase, palm domainCATH (4.3.0)
B3.30.1770.10 Alpha Beta 2-Layer Sandwich TPR 1 domain of DNA polymerase TPR 1 domain of DNA polymeraseCATH (4.3.0)
B1.10.287.690 Mainly Alpha Orthogonal Bundle Helix Hairpins B family DNA polymerase, finger domainCATH (4.3.0)
B4.10.80.20 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)
B4.10.80.30 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)
C3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
C3.90.1600.10 Alpha Beta Alpha-Beta Complex Palm domain of DNA polymerase B family DNA polymerase, palm domainCATH (4.3.0)
C3.30.1770.10 Alpha Beta 2-Layer Sandwich TPR 1 domain of DNA polymerase TPR 1 domain of DNA polymeraseCATH (4.3.0)
C1.10.287.690 Mainly Alpha Orthogonal Bundle Helix Hairpins B family DNA polymerase, finger domainCATH (4.3.0)
C4.10.80.20 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)
C4.10.80.30 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)
D3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
D3.90.1600.10 Alpha Beta Alpha-Beta Complex Palm domain of DNA polymerase B family DNA polymerase, palm domainCATH (4.3.0)
D3.30.1770.10 Alpha Beta 2-Layer Sandwich TPR 1 domain of DNA polymerase TPR 1 domain of DNA polymeraseCATH (4.3.0)
D1.10.287.690 Mainly Alpha Orthogonal Bundle Helix Hairpins B family DNA polymerase, finger domainCATH (4.3.0)
D4.10.80.20 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)
D4.10.80.30 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 DNA polymeraseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF03175DNA polymerase type B, organellar and viral (DNA_pol_B_2)DNA polymerase type B, organellar and viral- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
DNA polymerase -