1XQ4 | pdb_00001xq4

Crystal Structure of the Putative ApaA Protein from Bordetella pertussis, Northeast Structural Genomics Target BeR40

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1xq4a_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)
B	d1xq4b_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)
C	d1xq4c_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)
D	d1xq4d_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	ApaG-like	8055370	4007551	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF525	e1xq4A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF525	ECOD (1.6)
B	DUF525	e1xq4B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF525	ECOD (1.6)
C	DUF525	e1xq4C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF525	ECOD (1.6)
D	DUF525	e1xq4D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF525	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)
B	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)
C	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)
D	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF04379	ApaG domain (DUF525)	ApaG domain	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050718	ApaG-like	Family
A, B, C, D	IPR023065	Uncharacterised protein family ApaG	Family
A, B, C, D	IPR007474	ApaG domain	Domain
A, B, C, D	IPR036767	ApaG domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.