2AP6 | pdb_00002ap6

X-Ray Crystal Structure of Protein Atu4242 from Agrobacterium tumefaciens. Northeast Strucutral Genomics Consortium Target AtR43.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ap6a1	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
A	d2ap6a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
B	d2ap6b2	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
B	d2ap6b3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
C	d2ap6c2	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
C	d2ap6c3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
D	d2ap6d2	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
D	d2ap6d3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
E	d2ap6e2	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
E	d2ap6e3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
F	d2ap6f2	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
F	d2ap6f3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
G	d2ap6g2	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
G	d2ap6g3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
H	d2ap6h2	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	NIPSNAP	Hypothetical protein Atu4242	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
H	d2ap6h3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	NIPSNAP	8030796	4003759	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Dimeric alpha+beta barrel	8043175	3000089	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NIPSNAP	e2ap6A1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)
B	NIPSNAP	e2ap6B1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)
C	NIPSNAP	e2ap6C1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)
D	NIPSNAP	e2ap6D1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)
E	NIPSNAP	e2ap6E1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)
F	NIPSNAP	e2ap6F1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)
G	NIPSNAP	e2ap6G1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)
H	NIPSNAP	e2ap6H1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: NIPSNAP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
C	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
D	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
E	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
F	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
G	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
H	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF07978	NIPSNAP (NIPSNAP)	NIPSNAP	Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport [1]. This domain is often found in duplicate.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR051557	NipSnap domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011008	Dimeric alpha-beta barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012577	NIPSNAP	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.