2IOY
Crystal structure of Thermoanaerobacter tengcongensis ribose binding protein
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d2ioya_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like I | Periplasmic binding protein-like I | L-arabinose binding protein-like | automated matches | (Caldanaerobacter subterraneus subsp. tengcongensis ) [TaxId: 119072 ], | SCOPe (2.08) |
| B | d2ioyb_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like I | Periplasmic binding protein-like I | L-arabinose binding protein-like | automated matches | (Caldanaerobacter subterraneus subsp. tengcongensis ) [TaxId: 119072 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | L-arabinose binding protein-like | 8071195 | 4000206 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Type 1 solute binding protein-like | 8071196 | 3000125 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | Type 1 solute binding protein-like | 8071196 | 3000125 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Peripla_BP_4_C | e2ioyA3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_4_C | ECOD (1.6) |
| A | Peripla_BP_4_N | e2ioyA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_4_N | ECOD (1.6) |
| B | Peripla_BP_4_C | e2ioyB3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_4_C | ECOD (1.6) |
| B | Peripla_BP_4_N | e2ioyB2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_4_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
| B | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF13407 | Periplasmic binding protein domain (Peripla_BP_4) | Periplasmic binding protein domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Periplasmic sugar-binding protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR025997 | Periplasmic binding protein | Domain | |
| IPR028082 | Periplasmic binding protein-like I | Homologous Superfamily |
